FMO02049.5prime Sequence
767 bp (767 high quality bases) assembled on 2008-05-06
> FMO02049.5prime
CAGTCGACATGAACTCCATCCTGATAACCGGCTGCAATCGAGGATTGGGT
CTGGGCCTGGTCAAGGCGCTGCTCAATCTTCCCCAGCCGCCGCAGCATCT
ATTTACCACCTGCCGGAATCGCGAGCAGGCAAAGGAGCTGGAGGATCTAG
CCAAGAACCACTCGAACATACACATACTTGAGATTGATTTGAGAAATTTC
GATGCCTATGACAAGCTAGTCGCCGACATCGAGGGCGTGACCAAGGACCA
AGGCCTCAATGTGCTCTTCAACAATGCCGGCATAGCGCCCAAATCGGCCA
GGATAACGGCCGTTCGATCGCAGGAGCTGCTCGACACCTTGCAGACCAAC
ACGGTTGTGCCCATCATGCTGGCCAAGGCGTGTCTGCCGCTCCTTAAGAA
GGCAGCCAAAGCGAACGAATCCCAGCCGATGGGCGTGGGCCGTGCCGCCA
TTATTAACATGTCCTCGATCCTTGGCTCCATCCAGGGCAACACGGACGGC
GGAATGTACGCCTATCGCACCTCTAAGTCGGCCTTGAATGCGGCCACCAA
GTCGTTGAGCGTGGATCTGTATCCGCAACGCATCATGTGCGTCAGTCTGC
ATCCTGGCTGGGTGAAAACCGACATGGGTGGCTCCAGTGCCCCCTTGGAC
GTGCCCACCAGCACGGGACAAATTGTGCAGACCATCAGCAAGCTGGGCGA
GAAACAGAACGGCGGTTTTGTCAACTACGACGGCACTCCGCTGGCCTGGG
CAAGCTTTCTAGACCAT
FMO02049.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sni-RB | 1761 | CG10964-RB | 939..1681 | 7..749 | 3715 | 100 | Plus |
| sni-RA | 1105 | CG10964-RA | 283..1025 | 7..749 | 3715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8241581..8242144 | 749..186 | 2820 | 100 | Minus |
| X | 23542271 | X | 8242950..8243078 | 135..7 | 645 | 100 | Minus |
| X | 23542271 | X | 8242205..8242258 | 186..133 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:47:23 has no hits.
FMO02049.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:05:41 Download gff for
FMO02049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10964-RA | 227..972 | 7..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:19 Download gff for
FMO02049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sni-RA | 283..1028 | 7..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:18:25 Download gff for
FMO02049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sni-RA | 283..1028 | 7..753 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:25 Download gff for
FMO02049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8242951..8243078 | 7..134 | 100 | | Minus |
| X | 8241577..8242143 | 187..753 | 99 | <- | Minus |
| X | 8242205..8242256 | 135..186 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:19 Download gff for
FMO02049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8136984..8137111 | 7..134 | 100 | | Minus |
| arm_X | 8135610..8136176 | 187..753 | 99 | <- | Minus |
| arm_X | 8136238..8136289 | 135..186 | 100 | <- | Minus |
