FMO02057.5prime Sequence
773 bp (773 high quality bases) assembled on 2008-05-06
> FMO02057.5prime
CAGTCGACATGCGGCCTTTTGGCAACGACATAACAAACATCCCGAACGGT
GGTAATAATGGTGGTAATAATGGTGGTAATAATGGCAACAACGATCCCAA
CGACGGCAACGACAACCGGAACACGAACATATCCAGTGAGGATCCCAGCG
AGGAGTCCGGACTATCGGACGATCCGAGTATTCCGCCGCATATAGCGAGA
ATCGGCGGAATCGTTACCTGCCCCCCGATCGCTGGACAAGGAGTTATCCG
GGTGGTTCAGCGTTGCGAAGACGCCAAGGAGAACCACAAACTGGATCTTT
CAAGTTGTGAACTGATGCAAATACCAGATGCGGTATATCATCTTATGCGA
AACACAGAGTTGATCACCTGCAATCTCAGTGGCAATGTGCTCAAAAGCGT
TTCGCCCAAGTTTTCGCAAAAGTTTAGTACCATCACAGATCTTAATCTGT
CACACAACAAACTGTCGAGGCTGCCAGAAGAATTCGCCAGCTTGTCTGCG
CTAACCAAGCTGAATATCTCGAACAATTCATTTATCGTTTTGCCACAAGT
AGTCTTTAAGCTTCAGAGTCTTGCCAGTCTGGATGCCCAGAACAATGCCA
TTTTGGAAATTGATACCGATGAGGCAATTACCAGTGACAATTTGGCCCTC
GTTGATCTTCGGAATAATCCGCTGAGCAGAAACTGCCGACGAAAGCTGCA
GAGCTTCAAGACCCCCTTCCACCTTGAGATCTCCAAGGATGTCGAAGACG
ACTGGGCAAGCTTTCTAGACCAT
FMO02057.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sclp-RC | 1766 | CG74-RC | 220..966 | 9..755 | 3735 | 100 | Plus |
| Sclp-RA | 1102 | CG2471-RA | 220..966 | 9..755 | 3735 | 100 | Plus |
| Sclp-RB | 770 | CG2471-RB | 173..634 | 294..755 | 2310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11924158..11924443 | 294..9 | 1430 | 100 | Minus |
| X | 23542271 | X | 11921998..11922168 | 606..436 | 855 | 100 | Minus |
| X | 23542271 | X | 11921783..11921932 | 755..606 | 750 | 100 | Minus |
| X | 23542271 | X | 11922230..11922374 | 438..294 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:22:53 has no hits.
FMO02057.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:05:50 Download gff for
FMO02057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2471-RA | 220..969 | 9..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:36 Download gff for
FMO02057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sclp-RA | 220..969 | 9..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:08 Download gff for
FMO02057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sclp-RA | 220..969 | 9..759 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:08 Download gff for
FMO02057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11922230..11922373 | 295..438 | 100 | <- | Minus |
| X | 11921779..11921931 | 607..759 | 98 | <- | Minus |
| X | 11921998..11922165 | 439..606 | 100 | <- | Minus |
| X | 11924158..11924443 | 9..294 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:36 Download gff for
FMO02057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11815812..11815964 | 607..759 | 98 | <- | Minus |
| arm_X | 11818191..11818476 | 9..294 | 100 | | Minus |
| arm_X | 11816031..11816198 | 439..606 | 100 | <- | Minus |
| arm_X | 11816263..11816406 | 295..438 | 100 | <- | Minus |
