FMO02059.5prime Sequence
560 bp (560 high quality bases) assembled on 2008-05-06
> FMO02059.5prime
CAGTCGACATGACTGAGAGCATTGTGTGTCACAAGTGCCAGGAGGCCATC
ACCAAGCGTATGATCACCGCCCTGGGCAAGACGTGGCACCCGGAGCACTT
CCTGTGCCACCACTGCGATGAGCAGATCCTGGATGCCACCTTCAATGTTC
AGAGCGGAGAACCAGTGTGCAACAAGTGCTTCGTGGAGCGGTACACCTAC
ACCTGTGCCGGCTGCAAGAAGCCGATCCTTGAAAAAACCATCTGCGCCAT
GGGGGAGAGCTGGCACGAAGATTGCTTTTGCTGCGGCGGTGCCTGCAAAA
AGCCGCTCGCCAATCAAACGTTCTATGAGCGCGACGGCAAGCCCTATTGC
AAAAAGGATTACGAGGACCTCTTTGCTGCCAGGTGCGCCAAGTGCGAGAA
GCCTATAACGGACTCAGCGGTGCTCGCCATGAACGTGAAGTGGCATCGCG
ATTGCTTCCGGTGCAACAAGTGCGAGAATCCTATAACCTCGCAGACTTTC
ACCATCGACGGGGACAAGCCCGTGTGCCCCGCCTGCAATTGCGCAAGCTT
TCTAGACCAT
FMO02059.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31988-RB | 1149 | CG31988-RB | 390..923 | 9..542 | 2670 | 100 | Plus |
| CG31988-RA | 1014 | CG31988-RA | 297..830 | 9..542 | 2670 | 100 | Plus |
| CG31624-RC | 979 | CG31624-RC | 87..620 | 9..542 | 2520 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21201719..21202252 | 542..9 | 2670 | 100 | Minus |
| 2L | 23513712 | 2L | 21199404..21199937 | 542..9 | 2520 | 98.1 | Minus |
| 2L | 23513712 | 2L | 19404347..19404402 | 116..61 | 190 | 89.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:19:43 has no hits.
FMO02059.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:05:40 Download gff for
FMO02059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31988-RA | 322..866 | 1..546 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:43 Download gff for
FMO02059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31988-RA | 289..833 | 1..546 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:14 Download gff for
FMO02059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31988-RA | 289..833 | 1..546 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:14 Download gff for
FMO02059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21201716..21202259 | 1..546 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:43 Download gff for
FMO02059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21201716..21202259 | 1..546 | 98 | | Minus |
