FMO02061.5prime Sequence
979 bp (979 high quality bases) assembled on 2008-05-06
> FMO02061.5prime
ATAATACGAAGTTATCAGTCGACATGACTGAAAAAATAAGGAGGAGCAGG
AATCAGGATGTCCAGGATACAGCGATCAAGATTACTCCACGCAGCTCCAA
GTACAAAAACCAGCACAGGAAACGGGAGCAGCAAACCTCTCTTCTGGACT
TTGTCATCAAGCCGAGACCAAAAACACAAAGGCAAACAAAGGCACATAAA
CTTCAAAAGACACATTTAGCCATAACAAGAGGTAGCTACATAGTTTACAA
ACCCAAGGGCAAAACCCGCCTTGATCCCAAGAAGAAGATCACCAGGTTGA
AGAAGTCCGTACGTGTATATCGCACTTCAAAGAAGGCGGAGAGAGAAGTC
GCAGAGAATGATCTTGAAGGAGTCCCAGTAGTTGGTCAAGATATCAATCC
GAATGCTATTCCGCTGGAGCAACAAGTTCAAAACCTATCACTTAGTAAAA
CCCCTGCACCCAACAACCCTTCACAAGCAAAAACAGTACATGCCATTCAC
TCACGGCGATTTAGAAGCTATTGTGACAACTGCACCCGTCCTCGCCTCAA
GGAGTTGTCCACTCAGTTGTTAAGGGACCTGGATCGATTTCAGAAGCGCG
CCTTTGCCAAAAACGAGATTAAAGCGCGTGCACATCCCCGCCTGGTTTTG
GGTGTTCGAGAAGCTCTGGCGAGGCTAAGGATAAACAAGGTGAAATTGTT
GTTCCTGGCCACTGACTGCGAAATCTGCCCCGGCGAAAGTGGTCTAGATG
CGACTATAGAAGGCTTGAAATTCCAATGCCAGCAGCAACAAGTGCCCTAT
TGCTTTCCTCTGCTGAGAAGGGAGCTTTCTTATGCCCTCCAAAAGCGAGC
GCAAATTTGTTGCGTTGCTATCCTTGACTTTGACGGAGCGAATGCAACCT
ACGCAGATCTTCTTATGAAATAGAGGATGCCCGTGCGGAGTACAAACGCA
GAACTGCTTCGGCAAGCTTTCTAGACCAT
FMO02061.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sbp2-RA | 1055 | CG7066-RA | 37..975 | 24..961 | 4670 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8304193..8304686 | 24..517 | 2470 | 100 | Plus |
| 3L | 28110227 | 3L | 8304746..8304971 | 516..741 | 1130 | 100 | Plus |
| 3L | 28110227 | 3L | 8305022..8305245 | 739..961 | 1070 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:07:41 has no hits.
FMO02061.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:05:54 Download gff for
FMO02061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7066-RA | 28..981 | 16..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:46 Download gff for
FMO02061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sbp2-RA | 31..984 | 16..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:54 Download gff for
FMO02061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sbp2-RA | 31..984 | 16..970 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:54 Download gff for
FMO02061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8304187..8304686 | 16..517 | 99 | -> | Plus |
| 3L | 8304748..8304968 | 518..738 | 100 | -> | Plus |
| 3L | 8305022..8305254 | 739..970 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:46 Download gff for
FMO02061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8297287..8297786 | 16..517 | 99 | -> | Plus |
| arm_3L | 8297848..8298068 | 518..738 | 100 | -> | Plus |
| arm_3L | 8298122..8298354 | 739..970 | 97 | | Plus |
