FMO02080.5prime Sequence
834 bp (834 high quality bases) assembled on 2008-05-06
> FMO02080.5prime
CAGTCGACATGACATCCCAGTACCTGAGCCAGCTAATAACGGCCGACAAA
TTGTCCGCCGAGCCCTGGCCCGAAGACGCCACCCTCTACCAGCCGTATGA
AGCGGAACAGATCCTACTGCCGGAAAACGCCAGTTGCCTTGCTGTGAAGG
CTTACCTGAAGATGTGCAACCTCCCCTTTTTGATTCGGTCCTGTGCCAAC
GCGGAGCACATGTCGCCGGGCGGCAGGATGACCAAGTTGCCCTTCATCCG
CGCAGGAGCATTCATCTTTGCCGAATTCGAGCCGATCGTGAACTTTGTGG
AGCAGAAGGAACTGGCCATTGGCAGCTGGCAGGACGAGGACGAGAAGGCC
GACATGCGCACCTATGTGTCGCTGGTGGAGAACATCTTCACCATGGCTGA
GCTGTACATTAGCTTCAAGAACGAACGCGTCTACAAAGAGGTCACAGCGC
CCAGGAACGGAGTCGTTTTTCCCTGGCCCCTCAATCACATGCAGAACTAT
GGAAAGCGGCGGAACGCGCTGCGTCTGTTGAAGGTCTATCAGTGGGACGA
CCTGGACATCGATAGCGTCATTGACAAGGTGGCCAAGTGCTGTGAGACGC
TCGAATACAAGCTGAAAGAGTCGCCGGAAACGCCATTCTTCTACGGCGAT
CAGCCCTGCGAACTGGACGCCATCGCCTTCGGCCACCTCTTCAGCATTCT
GACCACCACGCTGCCGAACATGGCGCTGGCCCAAACGGTGCAGAAGTTCC
AGCACTTGGTCGAGTTCTGTCGCTTCGTCGATGAGAAGTACTTTCAGACG
AGGTGCCTACCAAATGCAAGCTTTCTAGACCATT
FMO02080.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8004-RA | 1242 | CG8004-RA | 72..878 | 9..815 | 4035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19927558..19928283 | 815..90 | 3630 | 100 | Minus |
| 3L | 28110227 | 3L | 19928354..19928437 | 92..9 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:22:44 has no hits.
FMO02080.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:06:13 Download gff for
FMO02080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8004-RA | 50..861 | 9..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:07 Download gff for
FMO02080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8004-RA | 72..883 | 9..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:25 Download gff for
FMO02080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8004-RA | 72..883 | 9..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:25 Download gff for
FMO02080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19927553..19928280 | 93..823 | 99 | <- | Minus |
| 3L | 19928354..19928437 | 9..92 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:07 Download gff for
FMO02080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19920653..19921380 | 93..823 | 99 | <- | Minus |
| arm_3L | 19921454..19921537 | 9..92 | 100 | | Minus |
