FMO02084.5prime Sequence
1176 bp (1026 high quality bases) assembled on 2008-05-06
> FMO02084.5prime
CAGTCGACATGAAGCGGAAAACGAGCGAGATCTGGTGCTTTTTCCGGGCG
GTGGACGACACGTTTGCGGTGTGTAATATCTGCAAGGCGAAGCTCTCTTA
CAAGACGACCACCACGAATCTAAGCAAGCACATGAACAGGATGCACCCCA
CATCGGGACTCAACCGGAACTCCAAGTACAAATTCCAGCCGCAGACCACC
ATCGCCATCGACCGGAACAAAGCCAAGCCGCGCAACTCAACGCAAGAGCT
GATATTGTTAGAATTCGTGAAGAAACATCCGCGTCTGCTTCAGAATCCGA
CGTGGGAAACACGGGGCAATCTGGAGTCGCTGTGGGAGGAACTGTCATCC
GAACTTAATAGCCACGGTCCGCCGCGAAAAGATATAGCCACCTGGAGAAG
GGCCTTAAAGGACTGGAAGAGGTTTATCCTGAGAAAGGTGGAAAAGAATG
AGATGCAGAACATGCCTTTTGGCACCAGTCTTACTTCGTCGGAGGAAACA
ATAGCCACACTGTGTAGATTAAACGAGGATGTAAGTCAGATTATTATGAA
GGTCTCCGACGATGAAATGCATGAGAATTCCACCACGGAATTTGATGTGG
ACGAAGTAGAGGATGTGGTCCCGGAAGAAGATGGTGGCGCCCTTCAGACT
TCCGCCGAGTACGTTTACGAACCGGAGGAGAACAAAACGGACATTGACCC
GCTTTACCTGCAATCTAACAAACGGGCCGCATTGGCCAGCAGTCGACTGG
CGGAGGAGGAGACCACACTGCTTGACAAGATTAGCAATAACCTAGAAATG
GTGCACGATACCGCCAACAGCGTTCAACTTGCACTCAATGAATTTTTTGT
CCTGTACAAGCAGAAGCTGTACGAGGACAAGCGACATCACTTGGCAATTG
AACAGTTAATGGCTGAGAAATAGAACTGAAAAGAACTATTGGAAATCGAG
CAAAAAAGCTGTCGCTCAAGCAGCTTTCTAGACATTCGTTGGCGCGCGGG
CCAGGTAGTGGTCATATCATATCATATCATATCATATCACACTAGCTAGG
AGATCCTGTCATGACTAGTGCTGATCTCCCCATAAAACGTGGCGGCACGA
GCGTTTGAACAATCGATGGATTGAGTATACGGAATCTATCACGGAATCCA
AGCGAGCTCGATTACATATTAGGCGG
FMO02084.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3995-RA | 1185 | CG3995-RA | 68..1039 | 2..969 | 4745 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17042042..17042614 | 969..401 | 2685 | 99.1 | Minus |
| 3R | 32079331 | 3R | 17042669..17043069 | 402..2 | 1990 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:48:05 has no hits.
FMO02084.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:06:06 Download gff for
FMO02084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3995-RA | 35..1007 | 1..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:39 Download gff for
FMO02084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3995-RA | 67..1039 | 1..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:31 Download gff for
FMO02084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3995-RA | 67..1039 | 1..969 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:31 Download gff for
FMO02084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17042042..17042613 | 402..969 | 99 | <- | Minus |
| 3R | 17042670..17043069 | 1..401 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:39 Download gff for
FMO02084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12867764..12868335 | 402..969 | 99 | <- | Minus |
| arm_3R | 12868392..12868791 | 1..401 | 99 | | Minus |
