FMO02087.5prime Sequence
795 bp (795 high quality bases) assembled on 2008-05-06
> FMO02087.5prime
CAGTCGACATGCGCAACTTCGTGATCATATTTAGCCTATCTCTGGCATTT
GGCATCGCCTCCGCCACCGATTATTGCAAAAAGAGCTGCGGAAGCACCAA
GAATCTGGGATGCGACAATAATGGAGCCTGGGCCTCAAGCTGTCCCAGTG
ACGCCACCCTGTTGACCCTCTCCAGCGCTGAGAAGGATGCACTGGTGGCC
AGGACGAACGAGTATCGCAACCACATCGCCGGCGGACTGAATGCCAATCT
GAGTGCCGCCTGTCGAATGGCCACGATCAAGTGGAACGATGAACTGGCTT
ACTTGGCCAGTTTGAACGTGAAAAGTTGTCAAATGAAACACGACGGCTGC
CACAATACGGATGCTTTCGACTGGTCTGGCCAGAATCTGGCCTGGATGGG
CTACTACAATCCGCTAAATGTTACACACTATCTAGAATGGGGCGTCGATA
TGTGGTACGATGAGGCGGTGTACACCAAACAGGCCTACATCGATGCCTAT
CCGTCGAACTACAATGGTCCGGCCATTGGACATTTCACGGTGCTCGTTGC
CGATCGGAATACGGAAGTGGGTTGTGCCGCGGCCACGTACTCCGTGTCCG
GCCAATCGTACAAGGCCTTCCTGCTGGCCTGTAACTATGCGGCCACCAAT
GTTCTGGGCATCAAGATGTACAGTTCCTGCTCCAAGGCGGCCAGCAAGTG
TACCACCGGTACCAATCCCAAGTACAAGTATCTGTGCAGCGCCAAGGAGG
AGTACAACGTAACAACCTCTTTCTATGCTAGCTTTCTAGACCATT
FMO02087.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ag5r-RC | 1760 | CG9538-RC | 342..1105 | 9..771 | 3795 | 99.9 | Plus |
| Ag5r-RB | 1446 | CG9538-RB | 28..791 | 9..771 | 3795 | 99.9 | Plus |
| Ag5r-RA | 1011 | CG9538-RA | 28..791 | 9..771 | 3795 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14785329..14785965 | 762..126 | 3185 | 100 | Minus |
| X | 23542271 | X | 14786093..14786210 | 126..9 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:22:55 has no hits.
FMO02087.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:06:21 Download gff for
FMO02087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9538-RA | 16..791 | 1..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:13 Download gff for
FMO02087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ag5r-RA | 20..795 | 1..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:30 Download gff for
FMO02087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ag5r-RA | 20..795 | 1..776 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:30 Download gff for
FMO02087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14785315..14785965 | 126..776 | 99 | <- | Minus |
| X | 14786094..14786216 | 1..125 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:13 Download gff for
FMO02087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14679348..14679998 | 126..776 | 99 | <- | Minus |
| arm_X | 14680127..14680249 | 1..125 | 96 | | Minus |
