FMO02088.5prime Sequence
1225 bp (989 high quality bases) assembled on 2008-05-06
> FMO02088.5prime
CAGTCGACATGAACCACTGGCTAAGTATCATTCTTCTTGGGGTGTGGATA
TCCGCTCCTGAAGGTCTGGGTAACACGATCAAGGATCGCAATCTCTTCGC
CACCGAACTCTTCCAAACCCTCGCCACAGATCGCCAGGATGAGAACGTGA
TCATCTCGCCGGTTTCCATCCAGCTGGCCCTCGGGTTGGCTTACTACGGA
GCTGAGGGCAGGACGGCCGCGGAACTGCAGAAGACCTTGCACGCCTCCGC
CAAGGAGAGCAAAGATGGTCTGGCCGAGAGCTACCACAACCTGCTGCACT
CTTACATCAAGTCCAAGACCGTGTTGGAGATCGCCAACAAGGTGTACACC
CGGCAGAATCTCACGGTATCTAGCCACTTCCGAGAGGTGGCCCAGAAGTA
CTTCGACTCCGAGGTAGAACCACTGGACTTCAGTCGCGAAACGGAGGCCG
TGGAGCAGATCAACCGCTGGGTGAAGCAGCAGACGGAGAACAAGATCGAA
CGGGTGGTGGAAAGCCTGGAGCCGGACACCAATGTGGCGCTGGTCAACGC
CATCTACTTCAAGGCTCGCTGGGCACGACCCTTCAACGACGAGGATACCC
GGGATCGCGAGTTCTGGCTGAGCGAGAGCCGGTCCATCCAGGTGCCAACC
ATGTTCGCAGACAACTGGTACTACTACGCCGACTACCCGGAACTCGACGC
CAAGGCCATTGAGCTGTTCTTCGAAAACATCAACCTGACCATGTGGTTCA
TCCTGCCCAACCAGCGTTCCGGACTACAGGCTCTGGAGCAGAAGCTCAAG
GGCGTCGACTTCATCTGCTCGAAGACCGCTGGCAGTGGCAGAGTGTGTCC
GTTTACCTGCCCAAGTTCAAGTTCGAGTTCGACACGGACCTAAGACCCAC
ATTGCATAAGATGGGAATCAGTGCCATGGTCCTCAGATGCAGCCGAACTT
CAGCAACATTTTCCAGGACTCGCCCATCGGCACTCGGATCACAAGGTGCA
GCACAAGAACCTTCATCGATGTGACCGAGATCGGATGTGAGGCGGCTGGA
GCTAGTTATGCTGCCCGAAATTCCCATGTCCTGCCCTTGAACCCAAGAAC
TTCCGTGACCGATCTTCAATTGCGTTCATCATTCCCGACAAGCACGCTGT
CCTATTTAACGGAACAATTGTCCAAGATTGCAGGACTTATCAGAGACTAT
CTCGTTTGGCCACGCGAGCCCCAGA
FMO02088.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn43Aa-RA | 1294 | CG12172-RA | 37..1200 | 9..1172 | 5340 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7147811..7148694 | 28..910 | 4370 | 99.9 | Plus |
| 2R | 25286936 | 2R | 7148873..7149019 | 909..1057 | 520 | 96 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:22:42 has no hits.
FMO02088.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:06:22 Download gff for
FMO02088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12172-RA | 23..1086 | 1..1065 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:38 Download gff for
FMO02088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Aa-RA | 29..1092 | 1..1065 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:45 Download gff for
FMO02088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Aa-RA | 29..1092 | 1..1065 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:45 Download gff for
FMO02088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7147811..7148694 | 28..910 | 99 | -> | Plus |
| 2R | 7148875..7149019 | 911..1057 | 95 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:38 Download gff for
FMO02088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3035316..3036199 | 28..910 | 99 | -> | Plus |
| arm_2R | 3036380..3036524 | 911..1057 | 95 | == | Plus |
