FMO02090.5prime Sequence
536 bp (536 high quality bases) assembled on 2008-05-06
> FMO02090.5prime
CAATCGACATGCGCGGCGCCCTAATGGATTACTATCTAAAAATACTCTTG
GTTATTTGCGCTGCCCACGAATTGGCCGGCGGAACGATCAAGTCTACCAG
AGATGCTGTTTACAAAAAATATCTGTCCCTAAGATCTTTGCCCTTCGAGG
ATTGCGGTTCTTTGTACCAGGTCAGCTACCTGGACATCGAGAGCTGTACG
ACACTGCCCTGCTCCATGGCCCGGAACGCGACAATTAAGGTTACTGTGCG
CTTCGATGATAATGGCAATGGCGTCAGCTTTCTGAAGCACGAAGTCCGAT
GGGTGTTTAACTACATCAAGACCCAGGCGGCCATAACTCCCGATCCCTGC
GACGGAGATCACGGATGCATAGAGAGCGCAAGTGGTGGAAAGGCCTATTG
GGCCAATATCTTTGTGAACGAAACTTTGCCGGTGATGAAAGGTAGCATGT
TGTGGGAATCCAAGGATGCGAACGATCAGAACCTAATCTGTTTCCAGGTT
CCCGTTGTAATCACAGTGGCAAGCTTTCTAGACCAT
FMO02090.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Npc2f-RA | 712 | CG6164-RA | 158..668 | 8..518 | 2555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24140526..24140696 | 264..434 | 855 | 100 | Plus |
| 3R | 32079331 | 3R | 24138052..24138202 | 8..158 | 755 | 100 | Plus |
| 3R | 32079331 | 3R | 24139778..24139887 | 156..265 | 550 | 100 | Plus |
| 3R | 32079331 | 3R | 24140808..24140892 | 434..518 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:16:30 has no hits.
FMO02090.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:06:24 Download gff for
FMO02090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6164-RA | 153..671 | 1..522 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:54 Download gff for
FMO02090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2f-RA | 153..671 | 1..522 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:49 Download gff for
FMO02090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2f-RA | 153..671 | 1..522 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:49 Download gff for
FMO02090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24138047..24138200 | 1..156 | 97 | -> | Plus |
| 3R | 24139779..24139886 | 157..264 | 100 | -> | Plus |
| 3R | 24140527..24140696 | 265..434 | 100 | -> | Plus |
| 3R | 24140809..24140897 | 435..523 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:54 Download gff for
FMO02090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19963769..19963922 | 1..156 | 97 | -> | Plus |
| arm_3R | 19965501..19965608 | 157..264 | 100 | -> | Plus |
| arm_3R | 19966249..19966418 | 265..434 | 100 | -> | Plus |
| arm_3R | 19966531..19966619 | 435..523 | 96 | -> | Plus |
