FMO02094.5prime Sequence
1092 bp (1007 high quality bases) assembled on 2008-05-06
> FMO02094.5prime
CAGTCGACATGAAGAGTAACGTCAATCAGGGCGGTTACGCCCCACCCGGT
TTCGGATCCGGATTCCAGCCAAATGCTCCGCCCGCCGAAGGATTCGGCTA
CCCACCGCCCACTGGGGGCCACAACGCCCCCTATCCCCCCGCACCCGGTC
ATCCACAGCCGCCGCCGCCCACGAATTACGGGTTTATGCCAGGTCCTCAG
CCAGCCGGATACGCTCCAGTTCCCCAAATGCCGCCGTACGGAGAAGCTCC
GCCCTACGGAGCCGGACAACCACCTTACATGGGTGGTCCAGGTGGTCAGC
CACCTTATGCGGGTGGTCCAGGCGGACAGCCACCTTATGTAGGTGGTCCT
GGTGGACAGCCACACTACGGAGGAGGAGCACCACCGCCCCAGGCCTTCGG
CGGATATCCTCCCGGACCAGCAGGACCAGGAGGACCACCAAACGCATTCG
GCGGTTATCCACCGGGACAACCACAACAGCCCATTGTCACGCAACCGGGA
ATGGGACCGGGAATGGGTCCAGGGATGGCCCCACAGGGCGGACCAGCAGG
AGACTGGATGAGTATACCTACAGGAATTCCGAACTGTCCGCGCGGATTGG
AGTACCTTACGACTATCGACCAGCTTTTAGTTAAGCAAAAGGTCGAGCTG
CTCGAGGCCTTCACTGGTTTCGAGACCAACAACAAGTTCACGATCAAGAA
CGCCCTGGTCAGAAGGTCTATTTCGCGGCGGAGGACAACGACTGCTGCAC
GCGCAATTGCTGTGGTCCTGCGCGTCCCTTCGACATGCGTGTCTTTGATA
ACTTCCAGCAGGAAGTGATCCACATGCACCGCCCGCTGGCCTGCTCCTCC
TGTCTGTTTCCCTGCTGTCTGCAGAGTATCGAGGTCTCGGCACCACCCGG
CATGTTATCGGCACCATTGAGCAGGATGGTCCATTTGTTCGCCATCCTTC
CGCATTCCTCACCACGTGGGTGACCGTGATGCCGCATCGAGGACCTTCTG
CACTTTTCGCTCTGCGCGACGTTCGAGTTCATGTTGTTTCGCTCACTGCG
AAAGATTGCCAGATCTCGGAACCGTGTCCGGCCTGCCCGTGT
FMO02094.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scramb1-RA | 2049 | CG32056-RA | 207..1299 | 5..1085 | 4865 | 97.4 | Plus |
| scramb1-RB | 1655 | CG32056-RB | 350..903 | 544..1085 | 2185 | 95 | Plus |
| scramb1-RC | 1640 | CG32056-RC | 353..890 | 560..1085 | 2120 | 95 | Plus |
| scramb1-RA | 2049 | CG32056-RA | 472..535 | 300..363 | 185 | 85.9 | Plus |
| scramb1-RA | 2049 | CG32056-RA | 502..565 | 270..333 | 185 | 85.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10221674..10222105 | 974..546 | 1905 | 97.7 | Minus |
| 3L | 28110227 | 3L | 10223867..10224237 | 550..180 | 1840 | 99.7 | Minus |
| 3L | 28110227 | 3L | 10224859..10225034 | 180..5 | 865 | 99.4 | Minus |
| 3L | 28110227 | 3L | 10224054..10224117 | 333..270 | 185 | 85.9 | Minus |
| 3L | 28110227 | 3L | 10224084..10224147 | 363..300 | 185 | 85.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:19:11 has no hits.
FMO02094.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:06:15 Download gff for
FMO02094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32056-RA | 205..1273 | 1..1061 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:08 Download gff for
FMO02094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scramb1-RA | 205..1273 | 1..1061 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:00 Download gff for
FMO02094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scramb1-RA | 205..1273 | 1..1061 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:00 Download gff for
FMO02094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10221611..10222098 | 553..1032 | 96 | <- | Minus |
| 3L | 10223864..10224237 | 180..552 | 99 | <- | Minus |
| 3L | 10224860..10225036 | 1..179 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:08 Download gff for
FMO02094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10214711..10215198 | 553..1032 | 96 | <- | Minus |
| arm_3L | 10216964..10217337 | 180..552 | 99 | <- | Minus |
| arm_3L | 10217960..10218136 | 1..179 | 98 | | Minus |
