FMO02095.5prime Sequence
1201 bp (984 high quality bases) assembled on 2008-05-06
> FMO02095.5prime
CAGTCGACATGCAGTCTCACAGCAAAAAGCGCGTTTGTTACTACTACGAC
AGCGACATTGGCAACTACTACTATGGCCAGGGTCATCCCATGAAGCCCCA
TCGCATACGCATGACCCACAACCTGCTGCTCAACTATGGGCTCTATCGAA
AAATGGAAATATACCGTCCCCATAAAGCCACTGCCGATGAGATGACCAAG
TTCCACTCGGACGAGTACGTCCGGTTCTTGCGATCCATTCGGCCGGACAA
CATGTCGGAGTACAACAAGCAGATGCAGCGATTCAATGTCGGCGAAGATT
GTCCCGTCTTCGATGGACTATACGAGTTTTGCCAACTCTCCGCCGGAGGA
TCCGTAGCTGCGGCCGTAAAACTGAATAAGCAAGCCTCGGAGATTTGCAT
CAATTGGGGCGGTGGGCTGCATCACGCCAAAAAATCGGAGGCCTCGGGCT
TCTGCTACGTCAACGACATTGTTCTGGGAATTCTGGAACTGCTTAAATAC
CATCAGCGTGTTCTCTACATAGATATAGACGTCCATCACGGCGATGGCGT
GGAGGAGGCGTTCTATACCACCGATCGTGTGATGACTGTCAGCTTCCACA
AGTACGGAGAGTATTTCCCGGGCACCGGCGATCTGCGAGACATTGGCGCC
GGCAAGGGAAAAGTATTATGCGGTTAATATACCCCTGCGCGATGGCATGG
ATGATGATGCGTACGAGAGCATATTTGTGCCCATTATCAGCAAGGTGATG
GAAACATTCCAGCCGGCAGCCGTGGTGCTGCAGTGTGGCGCCGATTCGCT
GACTGGCGATCGGTTAGGTTGCTTCAATCTCACCGTCAAGGGTCACGGCA
ATGCGTGGAGTTCGTGAAGAATATAATCTGCCATTCCTGATGGTCGGCGG
TGGTGGTTATACCATTCGTAATGTATCCCGCTGCTGGACCTATGAGACCT
CGTTGCACTGGGCGTGAGAAGCCACGAACTGCCCTACACGATTACTTCAG
TACTTTGGGCCCGATTTTAAGCTGCCACATTAATCCAGCAATATGACGAT
CGATACATCCGAGTACTGGAAAGATCAGAACCGTTGTTCGAACTGGCCCA
TTGCTTGCCTCACGCCTCCGGGCTCAATCCAAGGAATCGAGGATGCCTCA
CATGATTCGAGCACAAGACCGGTCCGCAAGGATAGATCTCTGTGCCGAGA
A
FMO02095.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpd3-RA | 2124 | CG7471-RA | 207..1364 | 9..1147 | 4880 | 96.1 | Plus |
| Hdac3-RA | 1660 | CG2128-RA | 689..880 | 417..608 | 285 | 77.2 | Plus |
| CG45100-RA | 1660 | CG45100-RA | 689..880 | 417..608 | 285 | 77.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4627611..4628502 | 165..1049 | 3750 | 97 | Plus |
| 3L | 28110227 | 3L | 4627420..4627532 | 52..164 | 565 | 100 | Plus |
| 3R | 32079331 | 3R | 5473590..5473781 | 608..417 | 285 | 76.6 | Minus |
| 3L | 28110227 | 3L | 4626940..4626983 | 9..52 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:19:22 has no hits.
FMO02095.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:06:16 Download gff for
FMO02095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7471-RA | 217..1320 | 1..1091 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:13 Download gff for
FMO02095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpd3-RA | 200..1303 | 1..1091 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:07 Download gff for
FMO02095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpd3-RA | 200..1303 | 1..1091 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:07 Download gff for
FMO02095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4626933..4626982 | 1..51 | 92 | -> | Plus |
| 3L | 4627420..4627532 | 52..164 | 100 | -> | Plus |
| 3L | 4627611..4628551 | 165..1091 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:13 Download gff for
FMO02095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4626933..4626982 | 1..51 | 92 | -> | Plus |
| arm_3L | 4627420..4627532 | 52..164 | 100 | -> | Plus |
| arm_3L | 4627611..4628551 | 165..1091 | 96 | | Plus |
