FMO02096.5prime Sequence
1217 bp (957 high quality bases) assembled on 2008-05-06
> FMO02096.5prime
CAGTCGACATGGTCGAGGACAAAGAGCAAGTGGCCAACGGGGAGCAGGTC
TCCAAGAAGGGAGCCAAAAAGCTGGCCAAGGCCGCTAAGAAAGCCGAACA
AAAAGCGGAGAACGCCTCCACCGCGGCGGCCAATAACGCTGGTGGCGATT
CTGCGGAGGATCACGCCGCCGGAAGATATGGCCTCTCGGAAATGATCCAA
TCCAAGGACAAACGCAGTGAACGCAACTTTGTCCCGGTTTCGGAACTAAG
CGGTCAGGTGGGCAAAGGGCTGGTCTGGGTGCGAGGACGCGTCCACACTT
CGAGAGCCAAGGGAAAGCAGTGCTTCCTCATCCTGCGCCAGCAGAGCAGC
ACGGTGCAGTGCATCCTGGCTGTCGGTGATGTTATCTCCAAACAGATGGT
CAAATTTGCGGGAAATATCCCTAAGGAGAGCATTATTGATATCCAGGCCA
AGCCAGTGGCGGTGTCTAGCAAGATTGAATCCTGCACAGAGCAGTCGCTG
GAATTGTCCGTCGAGCAGATATTCGTAATATCCCAGGCCAAGGCACAGTT
GCCATTGCAATCGAGGATGCATCGCGTCCCGAGAACGCCGATGATGCGGA
AGGTCTGAATATTCGCGTGAACCAGGACACGCGCTTGGACAACCGAGTGC
TCGACCTGAGGACCCCGGCAAATCAGGCCATTTTCCGACTGGAAGCCGGA
GTATGTCGCCTGTTCCGCGATATTCTCACTGAGCAGGGCCTTCACAGAGA
TTCACACGCCGAAGATCATTTCAGCGGCCAGTGAAGGAGGCGCCAATGTG
TTCACCGTGAGCTACTTCAAGGGATTCAGCCTATCTGGCGCAGTTCGCCG
CAGCTGTACAAGCAGATGGCCATCGCCGTCGATTTTGACAGGTCTATACC
GTAAGAGCCGTGTTCCGTGCAGAGGATTCGACACCTCATCGGAATTTGAC
CGAGTTCGTAGGCCTTGATCTGGATTGGACTTTAGTACCACTACAGGAAG
TGCTGCCACGGATTGCACACGTTTACGTTCCATTTTCAAGGACTGTTGTG
ATAGATTACGCCTATGGAATCGAATCTGTAGGCCGACGAACAAGGGTGGA
TGCTTCCAGTTTCTGGAGCCACACGGATCTCTCCAGTTCGCCATGCCGTC
CATGTGCCGAGGCTGGTGGAGACCCGCCAGAAGGAGAGATTGTCGTCACT
ACCACCAGCAAATATGA
FMO02096.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-asp-RB | 2246 | CG3821-RB | 388..1555 | 9..1168 | 4870 | 95.8 | Plus |
| Aats-asp-RC | 1899 | CG3821-RC | 41..1208 | 9..1168 | 4870 | 95.8 | Plus |
| Aats-asp-RA | 1976 | CG3821-RA | 118..1285 | 9..1168 | 4870 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12881508..12882065 | 416..974 | 2450 | 97.9 | Plus |
| 2R | 25286936 | 2R | 12880948..12881275 | 88..415 | 1625 | 99.7 | Plus |
| 2R | 25286936 | 2R | 12880790..12880870 | 9..89 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:27:31 has no hits.
FMO02096.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:06:17 Download gff for
FMO02096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3821-RA | 74..1235 | 1..1155 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:27 Download gff for
FMO02096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-asp-RA | 109..1270 | 1..1155 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:27 Download gff for
FMO02096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-asp-RA | 109..1270 | 1..1155 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:27 Download gff for
FMO02096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12880781..12880870 | 1..89 | 95 | -> | Plus |
| 2R | 12880950..12881275 | 90..415 | 99 | -> | Plus |
| 2R | 12881508..12882189 | 416..1095 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:27 Download gff for
FMO02096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8768286..8768375 | 1..89 | 95 | -> | Plus |
| arm_2R | 8768455..8768780 | 90..415 | 99 | -> | Plus |
| arm_2R | 8769013..8769694 | 416..1095 | 94 | -> | Plus |
