FMO02103.5prime Sequence
1189 bp (977 high quality bases) assembled on 2008-05-06
> FMO02103.5prime
CAGTCGACATGGATCACGAATACGTTGGGGTTAGCCCGCTGGGCGCAGCG
GACGGCAAGGGCGCCGGATCGAACGCCGTCATCCTGTGCTGCGAGTGCGG
AGTGGCCATCCAGCCGAATCCGGCCAACATGTGCGTCACCTGCCTGCGCA
ACCATGTCGACATCACGGAGAACATCCCAAAGCAGGCCGTGCTCCACTTC
TGTCGTAATTGCGAGCGCTATCTGCAACCGCCGAACGAGTGGATACAGGC
CGCCTTGGAGTCCCGCGAACTCTTGGCCATTTGCCTTAAGAAGCTAAAAG
GCCTGAAGGAAGTGAAGTTGGTGGATGCCGGCTTCATCTGGACAGAACAG
CACTCCAAGCGCATAAAGGTGAAGCTGACTGTGCATGGGGAGATCATCGG
GGGAACGATGCTCCAGCAGGTATTCGTGGTGGAGTTCACTGTGCAGAACC
AGATGTGCAACGACTGCCATCGGACCGAGGCCAAGGACTTCTGGCGCTGC
CTCGTGCAGGTTCGTCAGCGGGCCGAGAACAAGAAAACCTTTTACTATCT
GGAACAGCTGATCCTTAAGCACAAAGCCCACGAGAACACTCTGGGCATAA
AGCCGGAGCATGGCGGCCTGGATTTCTTCTATGCCAATGATAATCATGCC
CGGCGCATGGTTGATTTCCTCCTGACCATGGTGCCCGGCAAGGTAACAAC
CTCGAAGCGTCTCATCTCTCACGACATCCACAGCAACAACTATAACTACA
AGTACAACTGGTCAGTGGAAATAGCACCAGTATCGAAGGACAGTGCAGTT
TGCCTGTCCAAAAAGCTGCGCCACCAGCTGGGAAATCTCTCGCCATTGGT
TCTGGTCAACCGGGTGTCTAGCACATTCACTTGATTGATCCCCTGACCGC
ACAGATTGCAGACTCACCTCGCAGGTCTATTTCGAGCTCCCTTTGAGCCG
TCTGCAATCCCAAGCAGCTGGTGAGTACGTCGTCATGACATTGATGTGAT
CATGGAAAGATCGAAGACTATCTGGTCAGGCATGTTTCACAGCACGCTAT
CTGCAAATTTGGTGAGTGGCCACCTCGGACTGGCATCATCGATAGCCAAT
CACCCCGTCCCACTGGACACCTGTCTCAGTGCATTCGATTGCTCACACCG
GAAGCCAACACGATTCGGCATTCGCACAATGTGCTGCCG
FMO02103.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmd3-RA | 1791 | CG3460-RA | 130..1235 | 8..1094 | 4920 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2183612..2184539 | 933..8 | 4540 | 99.8 | Minus |
| X | 23542271 | X | 2183473..2183550 | 1008..934 | 240 | 96.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:04:05 has no hits.
FMO02103.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:26:05 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:50 Download gff for
FMO02103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmd3-RA | 130..1161 | 8..1028 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:31 Download gff for
FMO02103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmd3-RA | 130..1161 | 8..1028 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:31 Download gff for
FMO02103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2183468..2183549 | 935..1012 | 92 | -> | Minus |
| X | 2183610..2184539 | 8..934 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:50 Download gff for
FMO02103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2077501..2077582 | 935..1012 | 92 | -> | Minus |
| arm_X | 2077643..2078572 | 8..934 | 99 | | Minus |
