FMO02107.5prime Sequence
1202 bp (1042 high quality bases) assembled on 2008-05-06
> FMO02107.5prime
CAGTCGACATGGTCGGAATAACGCCCGCAGAGAAGAAAGCGCTGATAACG
CGCAATCTGCAGGAGACGCTCGGCGATGACAAGCTGACCAAGATCCTGGC
GGAGCGCGATCTAAAGATCTACTGGGGAACGGCGACGACGGGCAAGCCAC
ATGTCGCCTATTTCGTGCCCATGTCGAAGATTGCCGATTTCCTGAAGGCA
GGATGCGAAGTGACCATCCTGTTCGCCGATCTCCACGCCTATCTGGACAA
CATGAAGGCACCGTGGTCTCTCCTGGAGCTGCGAACCAAGTACTACGAAC
AGGTCATCAAGGCCATGTTGAGCTCCATCGGCGTTCCGCTGGAGAAACTG
AAGTTCGTCAAGGGCAGCGACTATCAGCTGTCCAAGGAGTACACCCTGGA
TGTATACAAGCTCAGCTCCGTGGTCACGCAACACGATGCCAAGAAGGCGG
GCGCAGAGGTGGTCAAACAGGTGGAGTACCCACTGCTCTCCGGTTTGCTT
TATCCTGGTCTGCAGGCTCTGGACGAGGAGTACCTCAAGGTGGACGCACA
ATTCGGTGGCGTGGATCAGCGCAAGATCTTTACCTTCTCAGAGAAGTATC
TGCCGCAGTTGGGCTACGAAAAGCGCATTCACTTCATGAATCCCATGGTT
CCCGGCTTGGCTGGTGGCAAGATGTCCTCTTCCGAGGAGGACTCAAAGAT
CGATCTTCTGGACTCCCCGGCCAACGTGAAGAAGAAGCTGAAGAATGCTT
TCTGTGAGCCGGGAAACATTGCCGACAACGGCCTGCTGTCCTTCGTGAAG
CACGTCCTGTTCTCGCTGTTCAAAGGAAGGCGAAAGCTTCGAGGTTAACC
GCGAGGCGGAGCATGGCGGCGATGTTACCTTCCTGAAATACGAGGATCTG
GAGAAGTACTACGCGGAGGACAACTGCCACCCGGGTGACCTGAAGGCCAC
CGTGAGAAGTACATCACCGACTGCTAGATCCCATTCGAAAGGCCTTTGAA
AACCCAGACCTGCAAACTGATGCTGCTGCCTTATCCACGCCTGCCAGTGA
GCAGAGCTGCTCCCGCTGCTGGAGCTGACGAAATGCACCCATCGCTGATA
TCCGCGTGCAGTCGTCAGTGCCGTCATCAAATGCGATTCTTATGGCTGAA
ATAACTGGCTGAGCCCACCTAACGAATTTATATGGCCGGGTGTAAATTGT
TT
FMO02107.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-tyr-RA | 1771 | CG4561-RA | 60..1172 | 9..1108 | 5090 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16418604..16419243 | 648..9 | 3200 | 100 | Minus |
| 3L | 28110227 | 3L | 16418175..16418542 | 1014..648 | 1590 | 97.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:48:54 has no hits.
FMO02107.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:06:39 Download gff for
FMO02107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4561-RA | 53..1177 | 9..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:57 Download gff for
FMO02107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-tyr-RA | 60..1184 | 9..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:55 Download gff for
FMO02107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-tyr-RA | 60..1184 | 9..1116 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:55 Download gff for
FMO02107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16418175..16418541 | 649..1014 | 97 | <- | Minus |
| 3L | 16418604..16419243 | 9..648 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:57 Download gff for
FMO02107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16411275..16411641 | 649..1014 | 97 | <- | Minus |
| arm_3L | 16411704..16412343 | 9..648 | 100 | | Minus |
