FMO02108.5prime Sequence
1195 bp (1017 high quality bases) assembled on 2008-05-06
> FMO02108.5prime
CAGTCGACATGTTTTGGCCGAGATTTGCGCCCGTTGAGGTTATGGTTGAG
CTGGAGTTCGGCAGCGGTTTTGAGGAGATGCACGAACAGATGTCCGGCTA
CAAGCGGATGCGGCGCGAGCACCAGGCGCACCTGGTCAAACTGGAGGAGA
AGTGCAAGGTGGACATGGAGGCGCACAAGACGGCCCTGGACAAGGAGTAT
GACACGCTGCTCCACAACTTTACGAGGGACCTCGATCGGCTTGAGACGAA
GCATCAGCAGGATGTGGAGAGGCGCGCTAAGCAAACGAGCGCCGCCGAGA
AGAAACTACACAAAGAGATTACGCTAAAGCAGGAGAACGATCGCAAGGTG
TACGACCTGAACCGCAAGAAGGAGTACAAGGCGAACAAGGAGCGCTGGAA
GCGGGAGCTCTCCATGGATGAGTCGACGCCCAAGCGGCAGCGCGATCTTA
CCCTGCAATCGCAGAAGGACAACCTCAAGCAGCACGAGGCGCAGGAGGAG
CAGCGCATGCTCCAGGCCCAGAAGCAGTACATCGAGCTGGAGATGCGCAA
GTTCAAGCGCAAACGGATGATCATGCAGCACGAGCACGAGGATCAGCAGC
TGCGCGACGAGCTCGGAAAGAAGGAGCAGCAACTGCAGCAGGCACACGCC
ATGCTTCTTAAGCACCACGAAAAGACACAGGAGCTGGAGTACCGCCAGCA
GAAGAGCGTGCACCAGTTGCGCGAGGAGCAGATAAACAAGCAACACGATA
CCGAGTTGCATAATCAAAAAGACTACATGGACCGCATCAAGAAAGAGCTG
GTACGCAAGCATGCGGTTGAGCTGAGGCAACAGCCGAGAGCTTGAAGCAC
AAGGAGCTCCAGATACGCAAGCAGTTCCGGGAAACATGCAAGACGCAGAC
GAAGCAATACAACGCCTACAGGCCCAAGTACTGCAGACGACACCAAAGGA
GCAACAGAAGGAGGTCATTAAGCAGCTGAAGGAAGAGAGCATCGCAAGCT
GACGCTGCCTCGGTGAACAGTACGAGCAAAGCATTGCGAAATGTTCAAGT
CAGAGCTACAACTAGACGAAGGCAGTGATGGAGTGCACGTACCCACGAAC
CGCTGAGTACGAGCCTGAATGCCTCATGCCTACGACAGAACAAAATCCAG
TCAGGACACGCGAATCGCGAGGCTCGTGAGACTCCAGAAAATACT
FMO02108.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tao-RG | 2621 | CG14217-RG | 209..1353 | 9..1143 | 5155 | 97.5 | Plus |
| Tao-RA | 2099 | CG14217-RA | 209..1353 | 9..1143 | 5155 | 97.5 | Plus |
| Tao-RI | 4230 | CG14217-RI | 2403..3484 | 72..1143 | 4840 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19572865..19573230 | 609..244 | 1830 | 100 | Minus |
| X | 23542271 | X | 19573291..19573464 | 245..72 | 870 | 100 | Minus |
| X | 23542271 | X | 19572252..19572427 | 1020..846 | 675 | 96 | Minus |
| X | 23542271 | X | 19572678..19572800 | 731..609 | 615 | 100 | Minus |
| X | 23542271 | X | 19572497..19572617 | 847..728 | 540 | 98.3 | Minus |
| X | 23542271 | X | 19573603..19573666 | 72..9 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:19:56 has no hits.
FMO02108.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:06:40 Download gff for
FMO02108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14217-RA | 172..1296 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:26 Download gff for
FMO02108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tao-RA | 172..1296 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:26 Download gff for
FMO02108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tao-RA | 203..1327 | 1..1117 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:26 Download gff for
FMO02108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19572252..19572425 | 848..1020 | 96 | <- | Minus |
| X | 19572497..19572613 | 732..847 | 98 | <- | Minus |
| X | 19572678..19572800 | 609..731 | 100 | <- | Minus |
| X | 19572866..19573228 | 246..608 | 100 | <- | Minus |
| X | 19573291..19573464 | 72..245 | 100 | <- | Minus |
| X | 19573604..19573671 | 1..71 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:26 Download gff for
FMO02108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19466285..19466458 | 848..1020 | 96 | <- | Minus |
| arm_X | 19466530..19466646 | 732..847 | 98 | <- | Minus |
| arm_X | 19466711..19466833 | 609..731 | 100 | <- | Minus |
| arm_X | 19466899..19467261 | 246..608 | 100 | <- | Minus |
| arm_X | 19467324..19467497 | 72..245 | 100 | <- | Minus |
| arm_X | 19467637..19467704 | 1..71 | 94 | | Minus |
