FMO02111.5prime Sequence
1059 bp (922 high quality bases) assembled on 2008-05-06
> FMO02111.5prime
CAGTCGACATGAGTCAAAAAACTGAAAGACCAGTGCTATCGGGTCAACGC
ATCAAGACCAGAAAAAGAGATGAAAGAGAAAAATATGACCCAACGGGATT
CCGTGATGCGGTCATTGCTGGTCTCGAAAAAACTGAAGGCGACCTGGAAC
AAATCTCTAAATATCTAGACAGCGCGGGCAACAAGCTCGACTATCGTCGC
TACGGTGAAGTTCTCTTTGACATATTGATTGCAGGAGGTCTACTAGTGCC
TGGTGGTTCTATATCTCAGGATGGCGAAAAGCCGCGCACAAGCTACTGCA
TCTTCGATGCGCCCGAGAGCATGGAGAGCATGCGCAACCATGAGCAGGTA
TTTGTCAAGCTCATCAGACGGTACAAGTACCTTGAGAAAATGTTCGAAGA
GGAGATGGGAAAGGTTCTATTATTCGTAAAGGGCTTTACTCCTAGTGAAC
GCATCAAGCTTGCGCGTATGACAGCGCTCTGGTTAGTCAACGGTTCTGTA
CCGCCAAATGTTTTACTGGTACTAAACAACGAGCACCTAATCAAGGATGG
CATTGCATTGGAGTTTCTACTAGAGCTGTTCCAGACGTTCAAGCAAGAGA
AGGGCATTGCATATCTGATTCAGGCGCTTAAGAAGGGTGGACTGGAAAGC
AAACTTATGGACTTTTTCCCACCGAACAACGTACTGAGGAATATTTTAAA
CAAGTTTTTCTTGACAAAGAACTTAACGAGATCGTCAAGCTACATAAAGC
TCAGCTAGCCAGGAGGCGAAGCGTGAGTTGCAGCAGGCGCTCATCGATGA
TATCAACGATCGAGAAGCCATATAATGAGATAACCCTCAGACATTAGGAC
TTCTCGCAGCGCACCAACATTCCCGATCATGAAATAATTGTATTATTTGG
TCCACCATCATGTCATGGGCGAATGAAACAGAGGAGAGCTGGTTACGGAT
CAGCTGTCGTCATCTGAAAACTACTGCCACTGTGCAGCTTCGCTCGACGA
ACGTCGGAATTGACCTATCTTGAAGGTGCAGGAATTTCTGCTTCGCAAGA
ACCTGAACC
FMO02111.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kra-RE | 1701 | CG2922-RE | 221..1285 | 9..1058 | 4630 | 97 | Plus |
| kra-RB | 1847 | CG2922-RB | 367..1431 | 9..1058 | 4630 | 97 | Plus |
| kra-RD | 2026 | CG2922-RD | 546..1610 | 9..1058 | 4630 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5599116..5599353 | 246..9 | 1190 | 100 | Minus |
| 3R | 32079331 | 3R | 5597276..5597515 | 891..653 | 945 | 97.5 | Minus |
| 3R | 32079331 | 3R | 5597772..5597939 | 652..485 | 840 | 100 | Minus |
| 3R | 32079331 | 3R | 5598204..5598345 | 486..345 | 710 | 100 | Minus |
| 3R | 32079331 | 3R | 5598942..5599046 | 349..245 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:19:59 has no hits.
FMO02111.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:06:31 Download gff for
FMO02111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2922-RG | 167..1231 | 9..1058 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:49 Download gff for
FMO02111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| exba-RD | 546..1610 | 9..1058 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:23 Download gff for
FMO02111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kra-RD | 546..1610 | 9..1058 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:23 Download gff for
FMO02111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5599116..5599353 | 9..246 | 100 | | Minus |
| 3R | 5598944..5599044 | 247..347 | 100 | <- | Minus |
| 3R | 5597272..5597515 | 653..894 | 97 | <- | Minus |
| 3R | 5597772..5597937 | 487..652 | 100 | <- | Minus |
| 3R | 5598204..5598342 | 348..486 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:49 Download gff for
FMO02111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1422994..1423237 | 653..894 | 97 | <- | Minus |
| arm_3R | 1423494..1423659 | 487..652 | 100 | <- | Minus |
| arm_3R | 1423926..1424064 | 348..486 | 100 | <- | Minus |
| arm_3R | 1424666..1424766 | 247..347 | 100 | <- | Minus |
| arm_3R | 1424838..1425075 | 9..246 | 100 | | Minus |
