FMO02112.5prime Sequence
1158 bp (1002 high quality bases) assembled on 2008-05-06
> FMO02112.5prime
CAGTCGACATGTGCGCGTGCCTAATCGCTAAGATAATTCTATGTAGTTTT
CGTTTGTATACAATAAGTGCCTTTTATATGTTAACGACGATGTCAGCCAG
CAGCAATACAAACAGCCTGATCGAGAAGGAGATCGACGACGAGGACATGC
TTTCGCCGATCAAGTCCAACAACCTGGTGGTGCGGGTCAACCAGGACACG
GACGACAACCTGCAGGCGCTATTCGACAGCGTCCTGAATCCGGGTGACGC
CAAGCGCCCGCTGCAGCTGCCCCTGCGCATGCGGAAGCTGCCCAACTCCT
TCTTCACGCCCCCGGCGCCCTCGCACTCGCGGGCCAACAGCGCCGACTCC
ACCTACGACGCGGGCTCCCAGTCGAGCATCAACATCGGGAACAAGGCGTC
CATCGTCCAGCAGCCAGATGGCCAGTCGCCCATCGCCGCCATCCCCCAGC
TCCAGATTCAGCCGTCTCCCCAGCACAGCCGCCTGGCGATACATCACTCC
CGAGCCCGCAGCAGCCCCGCCTCGCTGCAGCAGAACTACAATGTGCGCGC
CCGGAGCGACGCAGCAGCAGCCAACAATCCGAATGCCAATCCGAGCAGCC
AACAGCAGCCCGCTGGGCCCACTTTCCCAGAGAACAGTGCCCAAGAGTTC
CCCAGCGGCGCCCCGGCCAGCTCGGCCATTGATCTGGACGCCATGAACAC
CTGCATGTCGCATGACATTCCCATGTCCATGCAGACAGTGCACAAGAAGC
AGCGCTCCTACGACGTCATCAGCCCCATTCAGTTGAACCGCCAACTAGGC
GCCTTGCCGCCGGGATGGGAGCAAGCCAAGACCAATGATGGCCAGATCTA
CTACTTGAATCATACTACAAATCTACGCAGTGGGAGGATCCCAGAATCCA
ATATCGCCAGCAGCAGCAAATCTGATGGCCGAGCGAATAAAGCAGATGAA
TCTGGGCTAGCGTGCTCGACTGCCCAGATACTTAGTGTCTCCCTCAGATG
AGGATATCTTTGCAGTACTTGTCATGACGCACAGGCATGTAAATCCGCCG
TCTCCACAACTGACGATTGATGGCTTAAAGTATGCAAGCTTTCTAACATC
CTTGACCGCGGCCAGTAGGGCACTCTATCGTAGCTTATCCTTATCACACA
TCGTAGGC
FMO02112.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yki-RD | 1369 | CG4005-RD | 171..1248 | 9..1068 | 4945 | 98.2 | Plus |
| yki-RF | 1525 | CG4005-RF | 171..1110 | 9..946 | 4635 | 99.7 | Plus |
| yki-RG | 1460 | CG4005-RG | 106..1045 | 9..946 | 4635 | 99.7 | Plus |
| yki-RF | 1525 | CG4005-RF | 1270..1404 | 949..1068 | 320 | 88.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24067465..24068315 | 859..9 | 4240 | 99.9 | Minus |
| 2R | 25286936 | 2R | 24067166..24067244 | 946..869 | 345 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:23:06 has no hits.
FMO02112.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:06:32 Download gff for
FMO02112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4005-RC | 166..1115 | 1..950 | 99 | -> | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:20 Download gff for
FMO02112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RD | 166..1248 | 1..1068 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:36 Download gff for
FMO02112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RD | 166..1248 | 1..1068 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:36 Download gff for
FMO02112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24066261..24066313 | 949..997 | 92 | <- | Minus |
| 2R | 24067163..24067254 | 860..948 | 96 | <- | Minus |
| 2R | 24067465..24068320 | 1..859 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:20 Download gff for
FMO02112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19953784..19953836 | 949..997 | 92 | <- | Minus |
| arm_2R | 19954686..19954777 | 860..948 | 96 | <- | Minus |
| arm_2R | 19954988..19955843 | 1..859 | 99 | | Minus |
