FMO02113.5prime Sequence
903 bp (903 high quality bases) assembled on 2008-05-06
> FMO02113.5prime
CAGTCGACATGGGTGACAACGAACAGAAGGCGCTCCAGCTGATGGCCGAG
GCGGAGAAGAAGTTGACCCAGCAGAAGGGCTTTCTGGGATCGCTGTTCGG
AGGGTCCAACAAGGTGGAGGACGCCATCGAGTGCTACCAGCGGGCGGGCA
ACATGTTTAAGATGTCCAAAAACTGGACAAAGGCTGGGGAGTGCTTCTGC
GAGGCGGCAACTCTACACGCGCGGGCTGGAAGTCGTCACGATGCCGGAAC
CTGCTACGTAGACGCTTCCAACTGCTACAAGAAGGTGGACGTGGAGAGCG
CCGTCAACTGCCTGATGAAGTCCATCGACATCTACACGGATATGGGCCGC
TTTACGATGGCTGCCAAACATCACCAAAGCATCGCCGAGATGTACGAAAG
TGATCCCAATAATCTGGCCAAGTCTATTCAGCACTATGAGCAGGCGGCTG
ATTACTTCAAGGGTGAAGAGTCGGTCAGTTCGGCCAACAAGTGCATGTTG
AAGGTGGCCCAGTACGCCGCCCAACTGGAGGATTACGAGAAAGCAATATC
CATATACGAGCAGGTGGCCGCCTCCTCGCTGGAGAGCTCTCTGCTCAAGT
ACAGTGCCAAGGAGTACTTCTTCAGGGCCGCTCTATGCCATCTCAGCGTG
GACCTCCTGAACGCCCAGCATGCCATCGAAAAGTATGCGCAGCAGTACCC
AGCATTCCAGGACTCCAGGGAGTTCAAGCTCATCAAGGTGTTGTGCGAGA
ATCTAGAGGAACAGAACATCGAGGGATTCACAGAGGCCGTCAAGGACTAC
GACAGCATCTCCCGGGTTGGATCAGTGGTACACCACCATCTTGCTGCGGA
TCAAGAAGGCTGCGGACGAGGATCCCGATCTGCGAGCAAGCTTTCTAGAC
CAT
FMO02113.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaSnap-RA | 2070 | CG6625-RA | 157..1037 | 4..885 | 4385 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20314982..20315306 | 416..740 | 1625 | 100 | Plus |
| 3L | 28110227 | 3L | 20314607..20314924 | 100..417 | 1590 | 100 | Plus |
| 3L | 28110227 | 3L | 20315396..20315544 | 736..885 | 700 | 99.3 | Plus |
| 3L | 28110227 | 3L | 20313788..20313884 | 4..100 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:11:22 has no hits.
FMO02113.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:06:46 Download gff for
FMO02113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6625-RA | 153..1038 | 1..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:55 Download gff for
FMO02113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snap-RA | 155..1040 | 1..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:21 Download gff for
FMO02113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaSnap-RA | 155..1040 | 1..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:21 Download gff for
FMO02113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20313786..20313884 | 1..100 | 98 | -> | Plus |
| 3L | 20314608..20314923 | 101..416 | 100 | -> | Plus |
| 3L | 20314983..20315303 | 417..737 | 100 | -> | Plus |
| 3L | 20315398..20315547 | 738..889 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:55 Download gff for
FMO02113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20308083..20308403 | 417..737 | 100 | -> | Plus |
| arm_3L | 20308498..20308647 | 738..889 | 98 | | Plus |
| arm_3L | 20306886..20306984 | 1..100 | 98 | -> | Plus |
| arm_3L | 20307708..20308023 | 101..416 | 100 | -> | Plus |
