FMO02114.5prime Sequence
1189 bp (1002 high quality bases) assembled on 2008-05-06
> FMO02114.5prime
CAGTCGACATGATCATTAAAGCCCTAGCGATCGTTTCGCTGTGCCTGGCC
AGCATTCAGGCCTCCAAGGTGGGAGCTCCGCAGTTGCCCAAGAAGCACCT
GGTCTGCTACTACGATTCCGCCAGTTTCGTCAAGGAAGGTCTGGGCAAGC
TGGTAATCGATGAACTGGAACCGGCTCTGCAATTCTGCGACTATCTGGTC
TACGGCTATGCCGGAATCGAGCGCGATTCGCACAAGGCGGTGAGTCTGAA
CCAGCAGTTGGATTTGGATTTGGGCAAGGGACTTTACCGCACGGTGACCC
GCTTGAAGCGCAAGTATCCCAATGTCAAGATCCTGCTGAGTGTGGGTGGT
GACAAGGACATTGAGCTGGACAAGGATGCCAAGGAGCTGCCCAACAAGTA
TCTCGAACTGCTCGAGAGCCCCACAGGTCGCACTCGTTTCGTGAATACCG
TCTACTCGCTGGTAAAGACCTACGGATTCGATGGCTTGGATGTCGCCTGG
CAGTTCCCCAAGAATAAGCCGAAGAAGGTGCACAGTGGAATTGGCAGCCT
GTGGAAGGGCTTCAAGAAGGTCTTCTCCGGCGACTCGATCGTCGATGAGA
AGTCCGAGGAGCACAAGGAGCAGTTCACCGCTCTACTCCGTGATGTTAAG
AACGCCTTCCGTCCGGACAACCTGCTGCTCTCCACCACTGTTCTGCCCAA
TGTGAACTCATCCCTGTTCTACGACATTCCCGCTGTGGTCAACTATTTAG
ACTTTGTGAATCTGGGTACCTTCGATTTCTTTACACCCCAGCGTAATCCC
GAAGTTGCCGACTATGCCGCACCCATTTATGAACTGAGCGAACGCAATCC
CGAGTTCAATGTGGCTGCTCAAGTGAAGTACTGGTTGCGCAACAACTGTC
CCGCCAGCAAGAATCAATGTGGCGTGGCCACCTACGTCGCCCATGGAAAC
TGACGATGACTCTGGCGACACTGTGTTCGCGGTGAGACGTCAGGACGAGG
CTCAGTGGGTGTTACACTCAGTGCTGCATTACGCTGACGAGTCTGCGCCC
TGCTGCCAACGAACACGCTATTTGGAGGCGCCAATGCTCCGCCTGATCAG
TTCGGATCGGCCAAGCGTTTCGCCTTAGCCTACGCACGATAATGGGCACT
ATGGCACTCTGGGGTGACTCCAGGAATCCGGTACACGGC
FMO02114.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5210-RB | 1811 | CG5210-RB | 340..1480 | 9..1122 | 4905 | 96.9 | Plus |
| CG5210-RA | 1541 | CG5210-RA | 70..1210 | 9..1122 | 4905 | 96.9 | Plus |
| Idgf4-RC | 1807 | CG1780-RC | 462..870 | 454..862 | 595 | 77.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16692346..16692923 | 137..714 | 2890 | 100 | Plus |
| 2R | 25286936 | 2R | 16692986..16693246 | 715..973 | 1095 | 98.1 | Plus |
| 2R | 25286936 | 2R | 16691770..16691901 | 9..140 | 660 | 100 | Plus |
| X | 23542271 | X | 9929222..9929432 | 664..454 | 485 | 82 | Minus |
| 2L | 23513712 | 2L | 16449489..16449566 | 460..537 | 195 | 83.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:03:55 has no hits.
FMO02114.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:06:47 Download gff for
FMO02114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5210-RA | 73..1227 | 9..1133 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:44 Download gff for
FMO02114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5210-RA | 70..1224 | 9..1133 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:25 Download gff for
FMO02114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5210-RA | 70..1224 | 9..1133 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:25 Download gff for
FMO02114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16691770..16691899 | 9..138 | 100 | -> | Plus |
| 2R | 16692348..16692923 | 139..714 | 100 | -> | Plus |
| 2R | 16692986..16693434 | 715..1133 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:44 Download gff for
FMO02114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12580491..12580939 | 715..1133 | 91 | | Plus |
| arm_2R | 12579275..12579404 | 9..138 | 100 | -> | Plus |
| arm_2R | 12579853..12580428 | 139..714 | 100 | -> | Plus |
