FMO02115.5prime Sequence
1200 bp (1022 high quality bases) assembled on 2008-05-06
> FMO02115.5prime
CAGTCGACATGCCGTGCTGGTATTACGACAAAAAGGAGCTGCGGGAGACG
CCCTCGATCTTGGATGGAATAAGCTTCGAAACGGAGCGGCGGTACAGAAA
AGAAGGTGCTCGATTTATTATGGAATGTGGCACCAAAATGGGCTTGGGCC
ACAACACGATGGCCACCGGCGTTGTATATTTTCACCGATTTTACATGTTT
CATTCGTTCCGGAGTTTCCCCCGGTACGTGACTGCGTGCTGCTGCCTGTT
CTTTGCTGGCAAGGTGGAGGAGACGCCAAAGAAGTGTCGCGACATTATTA
AAACTGCGCGTGGCATCCTTACCGACAATTACTTCTACTCGTTTGGCGAC
GACCCTAAGGAGGAGGTGATGACGCTAGAGCGTATTCTGCTGCAGACCAT
CAAATTCGATTTGCAAGTAGAGCATCCTTACACCTTTCTCCTAAAGTACG
CTAAGTGTTTCAAAGGCGACCAGCAGAAGCTGCAAAAGATGGTGCAAATG
GCGTGGAACTTCGTCAACGACTCTCTCAGCACAGTAGTTTGTCTACAGTG
GGAGCCGGAGATTATCGCCGTGGCTCTTATCCATTTGGCCAGCAAGCTAA
GCAAATTCACTGTGCAAGACTGGGAGGGCCGCCAGCCACAGCAGCAGCGT
TGGTGGGATATGTTTGTGTCTGATGTAACGATGGAAATACTCGAAGACAT
CTGCCACCAAGTTCTGGACCTGTACCAATCAACCCAAAAAGAAGCGCTCC
AGCCAACCAGTCCGCCCCAAAAGCCACCAAGCAGAGCCGACAGTCCAAAA
TCCGGCAAGCTTACCAATTCTACGGGTATTGGACCACTTTCCGTTCCACA
ACAGCCGCCGCCCCCCGTATGTGGCAACGGTGGCGTGCTGGAAGTTAGCA
ACATTCAGAGCATTAAATCCCTAGCCAGTGCGTGCCAATCATTGGTCCTA
GCGACTCCCAGAACCTGTACAGGGCCCACACCACAGGTCAGCATCCGGGT
ACCACATTTATCATGCTCTCACGCGCTCGGCGGTAGTGCCTATGCGCGTA
CCCTCTTCGATGGGGGAGTCAGCGACGTGTCGACACTATAGCGGGAGCGC
TGCACTACACACCATGCCGCCTAGCTTGCTCAGGATCATGAATCTACACG
CGGTGCGTCATCGACAGCTATCAGCTTCTAGACACTCTCTCTTTGGCGAC
FMO02115.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycK-RC | 5858 | CG15218-RC | 420..1563 | 9..1129 | 5080 | 97.5 | Plus |
| CycK-RB | 1679 | CG15218-RB | 220..1363 | 9..1129 | 5080 | 97.5 | Plus |
| CycK-RA | 1879 | CG15218-RA | 420..1563 | 9..1129 | 5080 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22128709..22129723 | 1018..9 | 4825 | 99.5 | Minus |
| 2L | 23513712 | 2L | 22131022..22131126 | 255..151 | 345 | 88.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:20:08 has no hits.
FMO02115.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:06:49 Download gff for
FMO02115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15218-RB | 188..1344 | 1..1135 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:29 Download gff for
FMO02115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycK-RA | 415..1571 | 1..1135 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:33 Download gff for
FMO02115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycK-RA | 415..1571 | 1..1135 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:33 Download gff for
FMO02115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22128572..22129727 | 1..1135 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:29 Download gff for
FMO02115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22128572..22129727 | 1..1135 | 97 | | Minus |
