FMO02116.5prime Sequence
809 bp (809 high quality bases) assembled on 2008-05-06
> FMO02116.5prime
CAGTCGACATGCGCACCGGCTCGCCCAGCAGCAGCGGCTCCCAGTCGGAG
GAGGGCAGCAGTTCCTCAGATCACCAGCAGCCGCAGCAGGAAGCCCAGGA
GCAGGAGCAACAGCTGCACACTCCCACGCATGCACATGCCGCGGTGCCAG
CTGCCACATCGGAGGAGATCCTGGCGGAGTACGGCAGCAACCTGAAGCTA
CTCGAGTGCAATTCCCAGGTGGCCGAACTGCTGACCATATTGCGCGACAA
GAACACCACGCGCAGTGACTTCAAGTTCTATGCCGACCGTCTCATCCGGC
TGGTCATCGAGGAGTCGCTCAACCAACTGCCCTACACCCATTGCGATGTG
GAGACGCCCACCGGTGCGATTTACGAGGGACTGAAGTATCGCTCCGGCAA
CTGCGGCGTGTCCATCATCCGATCGGGAGAGGCCATGGAGCAGGGACTGC
GTGACTGCTGTCGCTCCATTCGCATTGGAAAGATCCTGGTCGAGTCCGAT
GCCAATACGCATGAGGCCCGCGTGGTTTATGCCCGCTTTCCCGATGACAT
CGGCAGCAGGCAGGTGCTACTCATGTACCCCATCATGTCCACGGGCAACA
CTGTGCTGCAGGCGGTGAATGTGCTGCGGGAACACGGCGTACCCGAGAGC
TGCATCATCCTGTCCAATCTCTTCTGCACACCCATTGCCGCTCGGACCGT
AGTGAATGCCTTCCCCAAGCTGAAGATCCTCACCTCCGAGCTGCATCCCG
TGGCACCTAATCACTTTGGCCAGAAATACTTCGGTACAGACGCAAGCTTT
CTAGACCAT
FMO02116.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5537-RC | 1191 | CG5537-RC | 106..889 | 8..791 | 3920 | 100 | Plus |
| CG5537-RA | 1106 | CG5537-RA | 106..889 | 8..791 | 3920 | 100 | Plus |
| CG5537-RB | 1045 | CG5537-RB | 106..881 | 8..783 | 3880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5811386..5811926 | 251..791 | 2705 | 100 | Plus |
| 3L | 28110227 | 3L | 5811078..5811321 | 8..251 | 1220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:20:22 has no hits.
FMO02116.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:06:50 Download gff for
FMO02116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5537-RA | 97..889 | 1..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:59 Download gff for
FMO02116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5537-RA | 97..889 | 1..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:39 Download gff for
FMO02116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5537-RA | 97..889 | 1..791 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:39 Download gff for
FMO02116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5811069..5811320 | 1..250 | 98 | -> | Plus |
| 3L | 5811386..5811926 | 251..791 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:59 Download gff for
FMO02116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5804169..5804420 | 1..250 | 98 | -> | Plus |
| arm_3L | 5804486..5805026 | 251..791 | 100 | | Plus |
