FMO02117.5prime Sequence
1186 bp (1025 high quality bases) assembled on 2008-05-06
> FMO02117.5prime
CAGTCGACATGGCTTCCTTGCGCGTCGTCAATAGATTAGTGTGCCGCGGT
TTTGTGGCTCTTACGTTGCTGCTGGTCTTCTTCAACGAGTTTATAGTTTA
CTACATGGCCCAGTCCAGTTGGCAGCCAATCGATTGCAAACTAGATAATT
GCACGCGCCTGCTGCTTATTGCTGATCCCCAGATACTGGGAAACTCCTAC
GATCGATCTTCGCACAGTCCTTTAGCCAGGTACGATTCGGATAGATACCT
GGCGAAGACTTTCGAGCGAGCTCTTGCCTTTACACAGCCTCACATCATAG
TGTTCCTGGGCGATCTGTTGGACGAAGGCAACATTGCCACGGCTCAAGAG
TACAAGCAGTACGTTCAGCGGTTCAGACGAATTTATCAGAATAAGAACTA
CAAAAAACGCGTCCATGTGCCGGGTGACAATGATATTGGCGGCGAGAATG
GCGACTACATATCCAACTCGAACCAAAGACGCTTTGAGAACGAATTCATG
AGTGAAGACCTCTTTGACTATGACAATCGATTACGCTTCTTCAAGATAAA
CCGCATGCTATTGGACTTTAGCAACCCGGATAGGGATAACAATGCGGATC
GTCTAAGAATTGGCGTATCCCATGCCCCGCTGCTCATTGGCGGAGGACCC
CTGTTGAGAGCCATCATCAGCGACTTGGATCCACATATCATTTTCTCAGG
ACACTGGCATGAATCCAGAATATTTATTTACCCCTCCACCAAGGTGATCA
ACTTTTATGAAAACTCCGTGAGGCATTTTGACTTGAAGGCCCTCAAAGAG
CAGGAGCACAGCTATCTGGAGATAATGGTGCCCACTTGCTCGTATCGCAT
GGGAAAGTCCAAGATCGGATTGGGCTACGCGGTTTTGGAAAACTACAATC
TGAGCTACACGGTGCTGTGCAGCCAAATCGATTTATCCTGCTCTTCACCT
ATGTTTTTTGGGGACTATTCGTCGTCTGTGGTTCGTCGTCTTTAGATGAT
GACCGTGTCCCTTCCGCGGGCCAAAAGCAGACGCTCTTTACGCGTCTCGA
CTATCCGCATTTGCAGCTTCTAGAACATCGTTGGCGCGCGGCCAGTAATG
GCTAAATCTAATCATAATATGTTAATCACTAGCCTAGGCATTCTGGCCTG
AACTAGGCTTGGCATTGCCCACAAAAAAAAGCCCCG
FMO02117.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:01:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mppe-RA | 1757 | CG8889-RA | 460..1520 | 9..1059 | 5050 | 99 | Plus |
| Mppe-RB | 1763 | CG8889-RB | 460..1526 | 9..1059 | 4980 | 98.4 | Plus |
| Mppe-RE | 1790 | CG8889-RE | 892..1553 | 408..1059 | 3055 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:01:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12026092..12026572 | 888..408 | 2405 | 100 | Minus |
| 2R | 25286936 | 2R | 12026723..12026988 | 407..142 | 1330 | 100 | Minus |
| 2R | 25286936 | 2R | 12027038..12027153 | 148..33 | 565 | 99.1 | Minus |
| 2R | 25286936 | 2R | 12025857..12026032 | 1054..888 | 455 | 93.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:01:49 has no hits.
FMO02117.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:06:51 Download gff for
FMO02117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8889-RA | 441..1508 | 9..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:37 Download gff for
FMO02117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mppe-RA | 460..1527 | 9..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:11 Download gff for
FMO02117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mppe-RA | 460..1527 | 9..1066 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:11 Download gff for
FMO02117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12025849..12026031 | 889..1060 | 93 | <- | Minus |
| 2R | 12026092..12026572 | 408..888 | 100 | <- | Minus |
| 2R | 12026723..12026985 | 145..407 | 100 | <- | Minus |
| 2R | 12027042..12027151 | 35..144 | 100 | <- | Minus |
| 2R | 12027223..12027248 | 9..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:37 Download gff for
FMO02117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7913354..7913536 | 889..1060 | 93 | <- | Minus |
| arm_2R | 7913597..7914077 | 408..888 | 100 | <- | Minus |
| arm_2R | 7914228..7914490 | 145..407 | 100 | <- | Minus |
| arm_2R | 7914547..7914656 | 35..144 | 100 | <- | Minus |
| arm_2R | 7914728..7914753 | 9..34 | 100 | | Minus |
