FMO02118.5prime Sequence
1211 bp (1029 high quality bases) assembled on 2008-05-06
> FMO02118.5prime
CAGTCGACATGAATCTATCATTCGCTGGCTGCGGATTCCTGGGCATCTAC
CACGTCGGAGTGGCCGTCTGCTTCAAGAAGTATGCACCGCATCTGTTGCT
GGAGAAGATCGGAGGCGCTTCGGCCGGTTCCCTGGCCGCCTGCTGTCTCC
TCTGCGATTTGCCATTGGGCAGCATGACTTCGGACTTCTTCAGGGTGGTG
AACGAAGCTCGTCGCTACTCCCTGGGTCCCTTCAGTCCCTCCTTCAACAT
CCAGACCTGTCTGCTGGAGGGTCTACAGAAGCATCTACCAGACGATGCTC
ACAAGCGGGTGAATGGACGACTGCACATTTCGCTTACCCGCGTGTACGAT
GGCAAGAACGTGATCATCTCGGAGTTTGAGTCACGGGAAGAGGTCCTGCA
GGCGCTGTTGTGTGCGTGCTTCATACCCGGATTCTCCGGCATCTTGCCGC
CCAGATTCCGTGGCGTTCGCTACATGGATGGTGCCTTCTCGGACAATCTG
CCCATTCTGGACGAGAACACCATTACGGTCAGTCCGTTCTGCGGCGAGAG
TGATATTTGCCCGAGGGATCAGAGCTCGCAGCTCTTCCATCTGAATTGGG
CCAACACCAGCATCGAGATCTCCAGACAGAACATCAATCGCTTCGTGCGC
ATCCTTTTTCCGCCGCGTCCCGAGTTTCTGTCCAAGTTCTGCCAGCAGGG
ATTCGATGATGCCCTGCAATTCCTGCATCGCAACAATCTGATCAACTGTC
GACGCTGCGTGGCGGTTCAGTCGACATTCGTGGTTTCCGAAACGGTGGCC
CAGCCCCAGGAGTTCGATCCCGAGTGCAGGGAGTGCAAGAAGCACAGAAA
GGACGCCTTGAGCTCAAACATGCCCCAAACGGTACTGGATGTCATTCAGA
CTATATCGAACAAGCCAATAAGGGTCTGGCCAACTGGATTTCAAGCATCG
CGGCATTAAGCTGCTTTCCCTACAGCCACGTGCCCATGGACTTTCTGCTG
GCACATTTCAAAATATCAGCACTGACGCCCAACTACCAGCAGCAGAGTAT
GGTGGAGGACTTATTTTGCAGTGACCAGCCATGCGATACGACTGCTATAA
TTCACGCCTCTTATGAACAGCCTCACTCGATGCCAGGAACTCCTCATCAG
CCGTTAATTGAACCTGGTTCAATCTTGGTGGATGAAATTGGAGACCCACT
ACCTGCCTTGA
FMO02118.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bmm-RB | 2301 | CG5295-RB | 334..1547 | 8..1193 | 5150 | 96.4 | Plus |
| bmm-RA | 2437 | CG5295-RA | 334..1547 | 8..1193 | 5150 | 96.4 | Plus |
| dob-RA | 1855 | CG5560-RA | 511..769 | 315..573 | 305 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14778339..14779023 | 852..168 | 3425 | 100 | Minus |
| 3L | 28110227 | 3L | 14785918..14786079 | 169..8 | 810 | 100 | Minus |
| 3L | 28110227 | 3L | 14778123..14778279 | 1002..850 | 570 | 96.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:07:55 has no hits.
FMO02118.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:06:53 Download gff for
FMO02118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5295-RA | 340..1472 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:52 Download gff for
FMO02118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bmm-RA | 329..1461 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:01 Download gff for
FMO02118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bmm-RA | 329..1461 | 1..1116 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:01 Download gff for
FMO02118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14778111..14778277 | 852..1011 | 95 | <- | Minus |
| 3L | 14778340..14779022 | 169..851 | 100 | <- | Minus |
| 3L | 14785919..14786084 | 1..168 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:52 Download gff for
FMO02118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14771211..14771377 | 852..1011 | 95 | <- | Minus |
| arm_3L | 14771440..14772122 | 169..851 | 100 | <- | Minus |
| arm_3L | 14779019..14779184 | 1..168 | 97 | | Minus |
