FMO02119.5prime Sequence
1227 bp (1036 high quality bases) assembled on 2008-05-06
> FMO02119.5prime
CAGTCGACATGTTCAACGGGATGGTGAGAACCATCCGCGACAGCGTCGTG
GGCACCTATCCGTCCTGCCACGTATCCTCGCGGCTGGAGGAGCGCAGGGC
CAAGCAGCGGGCGATGCGACAGGAGCGTAGACGAAAACCGGACAAACCAG
ACGACTTTGTTACTTACGAGGATTCCGGCAGCGACGAGGAGACGCCCCAA
CAGCAGGAGGAGGTCCTGAACACATCCTACAACCTGTGCGACTACCTGCG
CAGCCGGGAGAGTGGACTCCGAGATCGTCGCAGTGTCAATGTGGAGTACA
CCAGCCGCTATGTGCTAACCCACGACATGCTGCGCGAGACGCAGATTAGT
CTGGGCTACATCAACAAGGTCTTCTGCTCCAAGTGGCTGAGCAGTCGACA
AGTGGTTTTCGGGACCAAGTGCAATAAACTGCTCGTCTACGATGTGAACA
TGCGCCGGGTGGACGCCATCCCAACGCTCTCAAATAGCCGGGCAAACCAT
CCTGAGGTCCAGGGTGGCCTGCATGCCATCGAGCTGTCGCCCAGCCGATC
CTTCCTAGCCACCGGTGCGCGCAACTCCTCCGATATTGCTGTTTACCGAC
TGCCTACGCTGGATCCCGTCTGTGTGGGCGAGGGTGGGCACCGCGACCTT
ATAATGGGCATGTGCTGGCTGGATGACCAGTTTCTTGTGTCCGGATCGAA
GGACTCGCGCATGGCTCTGTGGCGCATCAACGAGGATCACATGGAGTTTC
CAGATGGCGGCGAGGAAGCGTGTCCCACATTCGCAACCATCCACCCCCTT
AGTGTCAAGGAAGTTCGCACTGCCCAGAGGATTCGATCTCTTTGCTTCAA
CAAGGAGTTTAAGGAGATCGCCGCCCTCTCGCTGAACGGATACATTCACA
TCTGCAATGCGGAGACCTTCAAGCAGACACTCTCACGAAAGCTGCCCAAA
CTGCCAGGACACGTGAGCATCGCTACCACAGCGACGGCCTTTATGCCGTT
GGATGCCGTTCCTATACCATCCTTTGGACGCCCGACCCTTCAACCATTAG
AAGATCCATCCTCGATACGTGGCCTGGCGGATTACGGCGACTCGTCGAGT
TACCTGCCTCACGTGCACGGGTCTGACATGCCTCTATCTACAACATTCGA
TCGAGATTGGAAGCTGTGGAATGCCCTCGCGCACAGTGCACACTCGGGCC
ACAAAGAGATGTGTGTACTACCAGAGG
FMO02119.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3313-RB | 1897 | CG3313-RB | 214..1368 | 9..1150 | 5125 | 97.3 | Plus |
| CG3313-RA | 1783 | CG3313-RA | 100..1254 | 9..1150 | 5125 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12015928..12016482 | 830..276 | 2775 | 100 | Minus |
| 3R | 32079331 | 3R | 12016552..12016818 | 275..9 | 1335 | 100 | Minus |
| 3R | 32079331 | 3R | 12015662..12015869 | 1035..830 | 830 | 97.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:27:42 has no hits.
FMO02119.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:06:54 Download gff for
FMO02119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3313-RA | 214..1231 | 9..1025 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:33 Download gff for
FMO02119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3313-RA | 61..1078 | 9..1025 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:31 Download gff for
FMO02119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3313-RA | 100..1117 | 9..1025 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:31 Download gff for
FMO02119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12015673..12015868 | 831..1025 | 97 | <- | Minus |
| 3R | 12015928..12016482 | 276..830 | 100 | <- | Minus |
| 3R | 12016552..12016818 | 9..275 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:33 Download gff for
FMO02119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7841395..7841590 | 831..1025 | 97 | <- | Minus |
| arm_3R | 7841650..7842204 | 276..830 | 100 | <- | Minus |
| arm_3R | 7842274..7842540 | 9..275 | 100 | | Minus |
