FMO02121.5prime Sequence
1224 bp (999 high quality bases) assembled on 2008-05-06
> FMO02121.5prime
CAGTCGACATGGGCAACTCGCAACCGCGTAATGCAAGCAGAAGCAGAAGG
ACATCCCAGTGGCCACAAGGCGCAGCGGAACTAGGCGCCTCAGCCAGCGA
TCACCACTACCACCAGGAGGAGCTGTATCAGGAGCAGCAGCAGCAGCAAC
AACAGCCGCAACAGGAGCAACCGAGCAGCAGGAGAATCCAGTTCCAGGCC
CACACCAACCAGCCAACACAGTCGCATCCTCCGGGCGACGAGGAACAGCC
TGTACAATCACAGCAGCAACAGCTTTCCACCTGGAGTCTTGGCAGCCTTA
GCGGAGGACGACTCAACTGGAGCTTCTCCGGTGCCCGCAACTCATTTCGT
CATCGAAACAAGGCCACGCGAAAGAGCTTGACCTCACTTCATGGCTCTCG
TCGTGGCAAGACTCAGTGGCACCGACCTCTGACCAACTCAATCTTCAACT
CGCACTTTAAGGAGACCAGCAAGAACGATCTGTACCGTATCGATCATTTG
GTGGCCAAGGGAGCCTTTGGCGTGGTCTTCAAGGTGTCCAGCAAGAGTGA
CATTAGTCAGTGCTACGCCCTGAAAGTGCTAAAGAAATCAAAGCTCATCG
AAGACAACAGTGTACGGCAGATAAAGGACGAGGCGGACATTCAGAAGGTT
TGCGGCCATCATCCGTTTATCGTGAAGCAAATAGATCTGTGGCAAAACCG
CCACAACCTCCATATTCTATCGGAGTACGTACCCAACGGCGAGTTGTTCT
CAAAAATAACTCACTTCTCCATTGATCTGGTTCGTTTATACATTGGCGAG
ATAGCACTTGCCTTGGATTTTCTCCACAACGCTGGGATTATATATCGTGA
TGCGAAGCCCGGAAAAATCCTGCTAACTGAACAGTTTCACATAAAGCTAA
CCGACTTCGGCCTTAGCAAGTTGCTCAAACTGGGGGCAACAACGCGCACC
ATGTTGTGGCACTTTCAAATACATGGCCCGGAGATTCTGTGCGGGAACCT
ATGACATGCGGTGGACTGGTGGGCCTTGGGCGTATTGCCTGTCAAATGCT
GACCAAAGTCCCCAACATCAACGCCACTACTGCACCGCTGGAAGCGTGGA
GCCGAGACGCTGTCATGCCCATCATTGCTCAGATCACGGTGCTTGCAGAC
GTGACGGCAACGGCGAGGACTCTCTGGCTCGAGAGAGAGGTCCGACCTCT
ATCTCTCCACGCAAGGAGGCCGGG
FMO02121.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pk17E-RA | 2129 | CG7001-RA | 369..1554 | 9..1171 | 5105 | 96.7 | Plus |
| Pk17E-RC | 2123 | CG7001-RC | 369..1548 | 9..1171 | 5005 | 96.2 | Plus |
| Pk17E-RB | 1651 | CG7001-RB | 145..1076 | 263..1171 | 3835 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18788832..18789089 | 9..266 | 1290 | 100 | Plus |
| X | 23542271 | X | 18790675..18790893 | 375..593 | 1095 | 100 | Plus |
| X | 23542271 | X | 18791300..18791459 | 816..976 | 650 | 95 | Plus |
| X | 23542271 | X | 18790956..18791081 | 592..717 | 630 | 100 | Plus |
| X | 23542271 | X | 18790503..18790615 | 264..376 | 565 | 100 | Plus |
| X | 23542271 | X | 18791146..18791244 | 718..816 | 495 | 100 | Plus |
| X | 23542271 | X | 18793760..18793840 | 977..1053 | 195 | 91.4 | Plus |
Blast to na_te.dros performed 2014-11-28 22:36:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6887 | 139..296 | 202 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6769..6996 | 62..271 | 198 | 60.6 | Plus |
FMO02121.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:06:56 Download gff for
FMO02121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7001-RA | 367..1539 | 9..1158 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:32 Download gff for
FMO02121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pk17E-RA | 369..1541 | 9..1158 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:28 Download gff for
FMO02121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pk17E-RA | 369..1541 | 9..1158 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:28 Download gff for
FMO02121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18790506..18790615 | 267..376 | 100 | -> | Plus |
| X | 18790677..18790893 | 377..593 | 100 | -> | Plus |
| X | 18790958..18791081 | 594..717 | 100 | -> | Plus |
| X | 18791146..18791244 | 718..816 | 100 | -> | Plus |
| X | 18791301..18791459 | 817..976 | 95 | -> | Plus |
| X | 18788832..18789089 | 9..266 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:32 Download gff for
FMO02121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18685179..18685277 | 718..816 | 100 | -> | Plus |
| arm_X | 18684991..18685114 | 594..717 | 100 | -> | Plus |
| arm_X | 18682865..18683122 | 9..266 | 100 | -> | Plus |
| arm_X | 18684539..18684648 | 267..376 | 100 | -> | Plus |
| arm_X | 18684710..18684926 | 377..593 | 100 | -> | Plus |
| arm_X | 18685334..18685492 | 817..976 | 95 | -> | Plus |
