FMO02122.5prime Sequence
647 bp (647 high quality bases) assembled on 2008-05-06
> FMO02122.5prime
CAGTCGACATGAGGGCGGCTGTCTTTGTGTGTCTGCTGCTGGGATGGGTG
GGCGTGGCCACGCCAAGGCGTTTGCGCGGACCGCAAGCTGACCGACTGGC
GATCACCCTGTACTACGAAGCATTGTGTCCCTACTGCATGGAGTTCGTGA
CCACGCAGCTCAATCCCTCGATGGTCCGTCAGGATCGACTTCCATTCACT
GATCTTACGCTGGTTCCTTATGGAAATGCCAGGACGAACGATGACGGAAA
TGTGGAGTGCCAGCACGGAGTGATGGAGTGCGAATTGAACGCGTGGCACG
CCTGCATACTGGAGCACCATGACATTGCCCAATCCCTCAAGCTGATCGCC
TGCATGATGAGGGGTAAGAAGAACAGGCTGGAAAAGTGCGCTGACCACTA
TCAAATCGACGTGGGCGATGTCAAAAATTGCAAGAAAACGCGACAGGTGA
ACGACATTCTGAGGAAGTACGGCAAGGAAACGGCCAAGGTCTCATTTCAG
GGAGTGCCAGCCGTAGCTCTGGATAACGTTTATAACGCGGATCTATCAGC
AAACTTAACTGATCATTTTGATGCCATTTTTTGCGCCAAGTATAAGGAAA
AGTTCAATAAGCAGCTAAATAATTGTCAAGCAAGCTTTCTAGACCAT
FMO02122.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GILT2-RA | 712 | CG10157-RA | 73..694 | 8..629 | 3110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23679383..23679679 | 233..529 | 1485 | 100 | Plus |
| 3R | 32079331 | 3R | 23679093..23679258 | 68..233 | 830 | 100 | Plus |
| 3R | 32079331 | 3R | 23679732..23679837 | 524..629 | 515 | 99.1 | Plus |
| 3R | 32079331 | 3R | 23678967..23679027 | 8..68 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:36:32 has no hits.
FMO02122.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:06:43 Download gff for
FMO02122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10157-RA | 70..706 | 1..637 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:31 Download gff for
FMO02122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10157-RA | 66..702 | 1..637 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:25 Download gff for
FMO02122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GILT2-RA | 66..702 | 1..637 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:25 Download gff for
FMO02122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23678960..23679027 | 1..68 | 94 | -> | Plus |
| 3R | 23679094..23679258 | 69..233 | 100 | -> | Plus |
| 3R | 23679384..23679677 | 234..527 | 100 | -> | Plus |
| 3R | 23679736..23679845 | 528..637 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:31 Download gff for
FMO02122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19504682..19504749 | 1..68 | 94 | -> | Plus |
| arm_3R | 19504816..19504980 | 69..233 | 100 | -> | Plus |
| arm_3R | 19505106..19505399 | 234..527 | 100 | -> | Plus |
| arm_3R | 19505458..19505567 | 528..637 | 96 | | Plus |
