FMO02123.5prime Sequence
1215 bp (1015 high quality bases) assembled on 2008-05-06
> FMO02123.5prime
CAGTCGACATGATGGACGGCACGGATGACTCAAATCTGCTTAACAGCCCC
TCCACCAACAATGGAGCCACAATGGAAATCGCCTCGCCAACAAATCCACT
TGCCACTCCACCAGCAACAGGCGGTGCACCCGCACCAAGTGGAGCCACAA
ATGGCAGTGGATCCGCCACATCGCCGGATAGCTCCTCCTCAGCCCCGGCC
ACGCCGGCAGTTCTAGGCGAGAACGCCCTGCATGTCGAGATCTCCGATGC
GCTCAGCGAAAAGGAGAAGGTCAAGTTCACAGTGCACACCCGCACCACAC
TGCCGGGATTCTCAAAAAAGGACAATAACGTAGTGCGTCAGCACGAGGAG
TTCGTCTGGCTACATGACCGTATTGAGGAGAACGACGACTATGCTGGCTA
CATTATTCCGCCCTGTCCACCTCGTCCGGACTTCGATGCCTCCCGAGAGA
AGCTGCAGCGTCTTGGCGAGGGCGAAGGCAACATGACCAAAGAGGAGTTC
AAAAAGATGAAGTCAGAGCTGGAGGCTGAGTACCTAGCTACCTTCAAGAA
GACGGTGGCCATGCACGAGGTTTTCCTGCGCCGCCTTGCTAGTCATCCCG
TCTTTCGCGTCGATCAGCACTTGAAGGTTTTCCTGGAATACGACCAAGAT
CTGTGCGCTAAGCCACGCAAGAAGATGGCCATCTTTGGCGGCTTTGTCAA
GTCCCTGGGCAAGACCACAGACGAGATCTTGTTGAGCGCCACGGTTCGGG
ATGTAAATGACTTCTTTGAGACGAGCTGCAGTTCCTTACCGAGTACCACG
GCCACTTGCGCGAGGCAGCACTCAGGACGGAGAAAATGACGCAACGCCAC
AAGGATGTACGCGACTCGCATCAGAAGATTTCGAATGCGTTGACGCAGCT
CTCGACTACGGAAAGGGAAATGTGAGACGTTTGTGCCAGACAGCGGAGAT
TATTGAAAGGATCAGATCTGGAAACTCGAGTGGCTAGCGATCAGATCTCA
GCTGGGCGACCCTCTGCGCTACTATCAGCGGATAGCGACGCTGCCAAAGC
TTTTACTTATTCCGGGCGACTGGCGGTGTTTGCTGCTATGGAGCGGCCAT
TCGAACCTGGAAAAGGCTCGCCTCAAACAGGATGTTTCATGCGGCCGAAC
TGCTAGCGGAGGCCTGTAAAATCGAACTAATAGGTCCTGCCAGGTGAAAG
AGAGAGAGACTGTAA
FMO02123.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snx6-RA | 1803 | CG8282-RA | 114..1290 | 9..1171 | 5125 | 96.9 | Plus |
| Snx6-RB | 1821 | CG8282-RB | 114..1259 | 9..1143 | 5075 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8220045..8220435 | 404..14 | 1955 | 100 | Minus |
| 2L | 23513712 | 2L | 8219364..8219806 | 964..527 | 1940 | 98 | Minus |
| 2L | 23513712 | 2L | 8219870..8219991 | 526..405 | 610 | 100 | Minus |
| 2L | 23513712 | 2L | 8219209..8219297 | 1051..966 | 265 | 94.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:23:03 has no hits.
FMO02123.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:06:44 Download gff for
FMO02123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8282-RA | 103..1298 | 1..1179 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:44 Download gff for
FMO02123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snx6-RA | 107..1302 | 1..1179 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:56 Download gff for
FMO02123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snx6-RA | 107..1302 | 1..1179 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:56 Download gff for
FMO02123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8220045..8220439 | 8..404 | 99 | | Minus |
| 2L | 8219209..8219298 | 966..1051 | 93 | <- | Minus |
| 2L | 8219362..8219806 | 527..965 | 97 | <- | Minus |
| 2L | 8219870..8219991 | 405..526 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:44 Download gff for
FMO02123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8219209..8219298 | 966..1051 | 93 | <- | Minus |
| arm_2L | 8219362..8219806 | 527..965 | 97 | <- | Minus |
| arm_2L | 8219870..8219991 | 405..526 | 100 | <- | Minus |
| arm_2L | 8220045..8220439 | 8..404 | 99 | | Minus |
