FMO02126.5prime Sequence
857 bp (857 high quality bases) assembled on 2008-05-06
> FMO02126.5prime
CAGTCGACATGGTGACCCCGCAATCGCCGACGCCCATGTTCAATGGATTG
GACGATGATCTCTACAGCGACGCCAAATATGCCCACGAGATTAACGACAA
GATGCGGGTTCCCAAAAGAATAAAGGCCACCGGGGAGTATTCCAACGAGG
ATCTGCTGCTGTCCAACCAGAACGGGATGATCAGCTCCTGGAACTATCAC
GACAAGATCGACATGAATGTACCGGATCGAATTGTGGTCCTGGGCCACAA
TCAGCATCTGGAGACGCGATCTGCTCCGCGGGAAATCCAGCTGGAGAACT
CCATTCTGCCCAAGAACCCATCGGTCGGATTGGTGCGCGTCCAGACGCCA
CCGCGCATTATCACCCTCACCGATCAACACTTTCCCTCGGCCTCCGAGGA
GAGCTCGCCCATCCGGGCCAATGGTCATCATTTGTATGGTAATGATCTCG
ACGAGGACGCCGACGATGAGGAGGTCCATGCCACCCAATATGTGCGTGCC
AATGGAGTCGCCCGTATGGGATTTCAAGGCAATGACACCAATTCCGTTGA
ATCGGACTCGCAGTTGACCACAGGCAGTGCCAGCAAGCGCTCGCAGCTGA
ATCAACAGCAGCACAACAACCTGGATGCCTCAATGCTGGCGCACCGAGAG
GGCACGCCCATGGGCGAGCTGACGCCCCACGAGGAGATCCTGTATCTGAG
ACGCCAGCTGGCCAAGCTGAATCGCCGGGTGCTGAACATCGAGATCAACA
ATGAACAGCGCACGCAGCGGGAGAAGATCGTCTACTGTCTGGGCCTGGCC
TACTTCGTTCTCAAGACAATATTCTGGCTGAATCGCAACGCAAGCTTTCT
AGACCAT
FMO02126.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango11-RB | 1682 | CG30404-RB | 206..1041 | 4..839 | 4165 | 99.9 | Plus |
| Tango11-RA | 1629 | CG30404-RA | 153..988 | 4..839 | 4165 | 99.9 | Plus |
| Tango11-RC | 1007 | CG30404-RC | 90..366 | 563..839 | 1385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21719077..21719640 | 567..4 | 2790 | 99.6 | Minus |
| 2R | 25286936 | 2R | 21717421..21717699 | 839..561 | 1395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:35:09 has no hits.
FMO02126.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:07:02 Download gff for
FMO02126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30404-RB | 204..1041 | 1..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:12 Download gff for
FMO02126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango11-RA | 151..988 | 1..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:20 Download gff for
FMO02126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango11-RA | 151..988 | 1..839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:20 Download gff for
FMO02126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21717421..21717696 | 564..839 | 100 | <- | Minus |
| 2R | 21719081..21719642 | 1..563 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:12 Download gff for
FMO02126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17604926..17605201 | 564..839 | 100 | <- | Minus |
| arm_2R | 17606586..17607147 | 1..563 | 99 | | Minus |
