FMO02128.5prime Sequence
1193 bp (1005 high quality bases) assembled on 2008-05-06
> FMO02128.5prime
CAGTCGACATGTCGCTATCAAGCCTGCTGCCCACGCCGACGAACGCGATC
TGGGATCGGGAGGACGAGCGTCGCCTGGTCGCCCGCGGAGCACCAAAGAT
CGGAGCCCTGGTCTCCGCCAAAATCGCTGCTCCGCCGTACGGACAGCGTA
AGGATTGGGTACCACATACGGATGCGGACTTTGGCGATGGCGGCGCCTTC
CCGGAGATCCATGTGGCGCAATATCCACTAGGTCTGGGAGCACCAGGAAA
TGTTGGCAAGAAGTCGGATGCTCTGGCCGTTCGCCTGGACGACAAGGGAA
AGGTTAAATACGATGCCATAGCACGCCAAGGACATGGCAAGGACAAGATT
GTGTACTCGTCCATTTCGCAACTGCTGCCGGCGGAGGTGTTGGCCGAAGA
TGCGGATGAACTACAGCGCCCGGACGAGGAAACGGTGATGGAGACGACGG
AGGAGACGCGCCTGGCGCTGGAGAAGCTGACCAACCAGAAGATCACCTCA
GCGCTGCCCGTGCGCCATGCCCAGAAGGCGGGTCCCGCCCAGTACATTCG
GTACACGCCCTCGCAGCAGGGCGATACCTTCAATTCGGGCGCCAAGCAGC
GTGTCATCCGGATGGTGGAGGCGCAGCTCGATCCGATGGAGCCGCCCAAG
TTCCGCATTAACAAAAAGATTCCACGAGGTCCACCATCGCCGCCGGCACC
TGTCCTCCACTCACCATCGCGCAAGGTGACGGTCAAGGAGCAAAAGGAGT
GGAAAGATCCCGCCCTGCATATCGAACTGGAAGAACGCCAAAGGTTACAC
CATTCCACTGGACAAGCGTCTGGCAGCCGATGGACGCGGTCTGCAGCAGT
GCACATCAACGAGAAGTTCGCCAAGATGGCCGAGGCGCTGTACATAGCCG
ATCGCAAGGCGCGCGAGGCGGTGGAGCACGCTCCCAGCTGGAAAGAAGCT
GGCCCAAAAGGAGAGAGAGAGAGATATGCTGCGTATGATGGCGCACCGGC
TCGCGAGAGCGAGCGGGACTACGCATCCGGAGCAGCGAGCCATCTGTTCC
GGAGCTACGATCGAGGTGCGTGACGCACGACTGCGGCAGACGGCCAAGGA
ACCCCAGCGGATAGAACTTGCAGCGGCGTCGATGATCGAACTGCAAGGTA
AGGAGCGTGGTACATCTGGAAACAATCGCCTTTGGGGTTCGTG
FMO02128.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bx42-RB | 2403 | CG8264-RB | 158..1300 | 9..1126 | 5000 | 97.2 | Plus |
| Bx42-RA | 1955 | CG8264-RA | 158..1300 | 9..1126 | 5000 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9105395..9105959 | 795..230 | 2780 | 99.8 | Minus |
| X | 23542271 | X | 9106223..9106447 | 233..9 | 1125 | 100 | Minus |
| X | 23542271 | X | 9105089..9105333 | 1025..792 | 775 | 93.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:35:28 has no hits.
FMO02128.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:07:03 Download gff for
FMO02128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8264-RA | 152..1263 | 2..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:20 Download gff for
FMO02128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bx42-RA | 154..1265 | 2..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:29 Download gff for
FMO02128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bx42-RA | 154..1265 | 2..1094 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:29 Download gff for
FMO02128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9105008..9105331 | 794..1094 | 92 | <- | Minus |
| X | 9105397..9105957 | 232..793 | 99 | <- | Minus |
| X | 9106225..9106451 | 2..231 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:20 Download gff for
FMO02128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8999041..8999364 | 794..1094 | 92 | <- | Minus |
| arm_X | 8999430..8999990 | 232..793 | 99 | <- | Minus |
| arm_X | 9000258..9000484 | 2..231 | 98 | | Minus |
