FMO02130.5prime Sequence
1244 bp (1011 high quality bases) assembled on 2008-05-06
> FMO02130.5prime
CAGTCGACATGGAACGTGGCGGTTATGGTGGTGGTTCGGGACAGGGATAT
AATAATTTCGCTGTCCCCCCACCAAATTACCAGCAAATGCCAAATAAAAC
GGGTAACTACAACGAGCCACCTCCGAACTACGGCAAACAAGGCGGTGGTT
ATGATTCCGGTTCCGGTCATCGTGGTTCTGGTGGCAGCGGCAACGGTGGC
GGCGGCGGCGGATCATGGAACGACAGAGGAGGCAATTCCTACGGAAATGG
AGGCGCCAGCAAGGACAGCTACAACAAAGGACACGGAGGATACTCGGGCG
GCGGCGGTGGTGGTGGAGGAGGCGGCGGCGGTGGGTCCGGTGGCAACGAC
ATGATCACCCAGGAGGACACCATCTTTGTCTCCGGCATGGATCCCTCGAC
CACCGAGCAGGACATTGAGACACACTTTGGAGCAATTGGCATCATCAAGA
AAGACAAGCGTACAATGAAGCCCAAGATTTGGCTGTACAAGAACAAGGAG
ACCGGCGCCTCCAAGGGAGAGGCCACTGTCACCTACGACGACACCAATGC
TGCACAATCCGCCATTGAATGGTTCGATGGACGCGACTTCAACGGCAATG
CGATCAAGGTGTCGCTGGCCCAGCGCCAGAACAACTGGAACAAGGGCGGA
GGCGGCGGCGGCGGTGGTGGTGGTCGCGGAGGATTTGGCGGACGTCGCGG
TGGTGGTGGCGGCGGAGAGGTGGCGGCGGCGGTGGATGTCGCTTCGATCG
CGGAGGAGGCGGTGGCGGCGGACGCTACGATCGCGGAGGAGGCGGTGGTG
GTGGCGGCGGCGGTGGCAACGTGCAGCCCCGTGATGGTGACTGGAATGCA
ACAGCTGTACTACACCAACTTTGCCTGGCGCAACGAATGCAATAGATGTA
AGACTCCCAAGGGCGACGACGAGGGCTCTAGCGAGGTGGTGGAGGCGCCG
GCTACGGCGGCGGTGGTGGCGGAGAGCTTACGACCGAGGAAATGATCGTG
ATCCGCGCGTTGTTATCCACACAGAGAGATCGCGGTGGCCAACTTCGCCA
GGAAGGCGAAGGCGGCGGCGCGTTGTTGGTGGCTACTTCCCGCCTTCAAT
GACACCAATGCCGAGACCGCGGTTGTCCGGTGAGTGGTTGTGGCGCAATT
GCCGCATGTGTTGAACCGATGAAAACGATGGTGAGTGCTGATAATCGTGT
GCTCTCTAGAACATCATTGGCACGAGTCAGCTTTTTCTCTTTAT
FMO02130.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| caz-RB | 1666 | CG3606-RB | 140..1316 | 7..1181 | 4980 | 96 | Plus |
| caz-RC | 1621 | CG3606-RC | 235..1271 | 147..1181 | 4280 | 95.5 | Plus |
| caz-RD | 1534 | CG3606-RD | 149..1184 | 148..1181 | 4275 | 95.5 | Plus |
| caz-RC | 1621 | CG3606-RC | 140..237 | 7..104 | 490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16292193..16292643 | 448..895 | 2075 | 98.9 | Plus |
| X | 23542271 | X | 16291939..16292110 | 278..449 | 860 | 100 | Plus |
| X | 23542271 | X | 16289027..16289160 | 16..149 | 670 | 100 | Plus |
| X | 23542271 | X | 16289225..16289322 | 147..244 | 490 | 100 | Plus |
| X | 23542271 | X | 16292884..16292992 | 894..1000 | 400 | 95.4 | Plus |
| X | 23542271 | X | 16291056..16291092 | 244..280 | 185 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:11:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 622..728 | 412..524 | 119 | 59.3 | Plus |
| Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 9139..9245 | 412..524 | 119 | 59.3 | Plus |
FMO02130.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:07:05 Download gff for
FMO02130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3606-RB | 98..1177 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:58 Download gff for
FMO02130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| caz-RB | 134..1213 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:25 Download gff for
FMO02130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| caz-RB | 134..1213 | 1..1075 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:25 Download gff for
FMO02130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16289027..16289158 | 16..147 | 100 | -> | Plus |
| X | 16289226..16289322 | 148..244 | 100 | -> | Plus |
| X | 16291057..16291091 | 245..279 | 100 | -> | Plus |
| X | 16291941..16292110 | 280..449 | 100 | -> | Plus |
| X | 16292195..16292643 | 450..895 | 98 | -> | Plus |
| X | 16292886..16293001 | 896..1009 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:58 Download gff for
FMO02130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16183060..16183191 | 16..147 | 100 | -> | Plus |
| arm_X | 16183259..16183355 | 148..244 | 100 | -> | Plus |
| arm_X | 16185090..16185124 | 245..279 | 100 | -> | Plus |
| arm_X | 16185974..16186143 | 280..449 | 100 | -> | Plus |
| arm_X | 16186228..16186676 | 450..895 | 98 | -> | Plus |
| arm_X | 16186919..16187034 | 896..1009 | 94 | == | Plus |
