FMO02131.5prime Sequence
1198 bp (1001 high quality bases) assembled on 2008-05-06
> FMO02131.5prime
CAGTCGACATGAGCATGCTGTTGCGACGCAATTCCAGCCAGCTGCGGCTA
CTTCTCTCCTCCGCCGCTCAGGCCACGCGCCTGGCATCCAGCGGAGTGGA
GCCACCATCTGCTGGACAGCAGGAGATTAAAAAGCAGAGGCGCCAGCCAC
CGCCCGTGGTTCCCGATTCGGAGATCAAGAAGTCCGTGTTCATCTCGCAG
TCCAGCGATGTGTTCACCAACCTCGCTCTAGAGGATTGGCTGTACAAAAA
CTTTGATTTCAGCCGCCACCATGTGCTGCTGCTGTGGGCCAACGACCCGT
GCGTAGTCATTGGTCGCCACCAGAATCCCTTCACCGAGGCTAATGTTTCG
CAGCTGGTGGAACGCGGCATAACACTTGCACGCCGCAATAGTGGCGGTGG
AGCGGTGTACCATGATCTTGGGAACCTCAACTGCACCTTTTTCTCGCCCA
GAGAGCGCTACGATCGCAAGTACAACCTGAACATCGTGACCAGGGCCTTG
TTCCGCGAATGGGCCATCAAGGCAGAGATAAATGAGCGCGACGACATTGT
AGTGATGAATAAGAAGATTTCCGGCACTGCGGCCAAGCTGGGACACCCGA
ACTCGTACCATCACTGCACCATTTTGGCCAGCGCCAACAAATTGCACTTG
GGCGAATCTCTGGTGCGGGAGCCGGCCAATTATATTAGCAAGGCCACGGC
TTCGGTGCCGTCGCCCATTCGCAACCTGGTTGATGTCAATCGCACGGTGA
ACGTTGCTCAGCTGCGTTCCGCCGTGGGTTACGAGTATTTGAGAACGGCT
GCAACTACGCTTGAAGACGGCGGCAGCACACAGACGATGCAGCAGCGCGG
CTTTCAGCTGGTCAATCCCACAGAGAAATGGTTCCCCGGCATTGAGGATT
GCGCTCCAACTACAGCTCTTGGGACTGGGTCATCGGCAAGACTCCCAGTT
CACCGTGCAGAGAACTGGAGTGAAGGCGATGAGCAGACATGAAACTGAAC
TAACGTGAGTGAAGCGGATAATGAAGGAATCGCATCCAGCTGCCGCGAGC
GATCAGCTCGTCCGGTGGTGACCTCCGCTCCAGGCAGCCTTACACGAAGG
AAACTGAACGATACTTGGCGCCTTAGGTCGTACGCCATCGATTACCAGGC
ATACGAATCCCGCGACTTTCATAACACATTCCTGTGTCGCCGGGTCCT
FMO02131.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44243-RB | 2010 | CG44243-RB | 441..1578 | 8..1122 | 5055 | 97.5 | Plus |
| CG44243-RA | 2131 | CG44243-RA | 739..1876 | 8..1122 | 5055 | 97.5 | Plus |
| CG42837-RA | 2131 | CG42837-RA | 739..1876 | 8..1122 | 5055 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16197780..16198338 | 8..566 | 2795 | 100 | Plus |
| 2R | 25286936 | 2R | 16198483..16198881 | 565..961 | 1895 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:59:04 has no hits.
FMO02131.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:07:07 Download gff for
FMO02131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8446-RB | 239..1384 | 1..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:59 Download gff for
FMO02131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44243-RA | 735..1880 | 1..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:51 Download gff for
FMO02131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42837-RA | 735..1880 | 1..1125 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:51 Download gff for
FMO02131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16197776..16198338 | 1..566 | 99 | -> | Plus |
| 2R | 16198485..16198937 | 567..1013 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:59 Download gff for
FMO02131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12085281..12085843 | 1..566 | 99 | -> | Plus |
| arm_2R | 12085990..12086442 | 567..1013 | 97 | -> | Plus |
