FMO02132.5prime Sequence
1201 bp (1048 high quality bases) assembled on 2008-05-06
> FMO02132.5prime
CAGTCGACATGGCCGATATAATGGATCTTTTATGCTCGGAAATCATAGTC
TACGAATCAGATCCATCATTGTATCGTTTGAACAAACGACAGCAGCAAAT
GTCCTCACCGGCGATCATTCGGGATCAATCATCGATATGTTCATCCTTGG
GGGACGCGGAATCCGATTCCCATCCGGATGCCCAGAACAATGCCGTAGTG
TGCAATATGAAGGAGCTGGTGTATATATACGCGTCCGTGGACTCGGCTGC
GAAAAATCCAGAACAATTGGAGCCGCCTCCGCCACCTCCACCACCGCCGC
CACCACCACCGACAGCGACCCAATCAATCCAAAGTTATCCGCGTTACATC
AGCCAGGAGCCACCGACGTCACATTGCCAACGACTCGACGAACGCCTGAC
CACAACAGCCGATCCACCCGCAACCGACAACGTGAACACTGCCATCGGGG
ATCCCACATTGTATTCGGATCGGTGTCTGGAGAATTTCCTCAAGGTCGAG
GAGAAGCACCACAAAATTCCCGACACGTACTTTAGCATCCAGAAGGATAT
TACGCCACCGATGCGCAAAATTGTCGCCGAATGGATGATGGAAGTGTGTG
CCGAGGAAAATTGCCAGGAAGAGGTCGTATTACTGGCATTAAATTACATG
GATCGATTTCTTTCGAGCAAATCAGTACGCAAGACCCAGCTACAAATTTT
GGCCGCAGCTTGCCTCTTACTGGCTTCAAAGCTCCGTGAACCCAGCTGTC
GTGCTCTTTCGGTGGATCTACTCGTTGTTTACACGGACAACAGCATCTAC
AAGGATGATTTGATTAAATGGGAGCTGTATGTGCTAAGTCGCTTGGGCTG
GGACCTCTCATCTGTGACTCCCTTGGACTTCCTTGAGCTTCTGATGATGC
GCCTGCCGATAGGCAGCAAAACTTTCCGGACATAAACATTGGCAAGTGCG
GGGACATGCTCAGCATTTATATCGTTGGCAGCAAAAGAACATAGTTTGCC
AGTTCTCGTCAGCACCATAGCTGCATCGAGCATAGCTGCGTCAATGAATG
ACTAAAGTGACATCTGCGATCGACCAAATCTTAACCTTCTTGAGTCTGAA
GACGATCTACAGCGTGGAGCAGCTCAGGTGCGAAATGATGCTGCAATGCG
ACTCTTTAAGAAGACAGTTCGGCATCTAGAAGACCATTTCTACTGGAAAC
A
FMO02132.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycD-RF | 2453 | CG9096-RF | 556..1758 | 9..1192 | 5235 | 96.8 | Plus |
| CycD-RE | 2256 | CG9096-RE | 359..1561 | 9..1192 | 5235 | 96.8 | Plus |
| CycD-RD | 2145 | CG9096-RD | 248..1450 | 9..1192 | 5235 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15908534..15909121 | 596..9 | 2940 | 100 | Minus |
| X | 23542271 | X | 15908097..15908318 | 815..594 | 1110 | 100 | Minus |
| X | 23542271 | X | 15907859..15908033 | 987..816 | 725 | 98.3 | Minus |
| X | 23542271 | X | 15907711..15907774 | 1072..1010 | 240 | 95.3 | Minus |
Blast to na_te.dros performed 2014-11-28 20:22:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 871..994 | 261..383 | 122 | 56.5 | Plus |
FMO02132.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:07:08 Download gff for
FMO02132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9096-RB | 329..1491 | 5..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:42 Download gff for
FMO02132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycD-RD | 245..1407 | 5..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:14 Download gff for
FMO02132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycD-RD | 245..1407 | 5..1151 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:14 Download gff for
FMO02132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15907859..15908033 | 816..987 | 98 | <- | Minus |
| X | 15908097..15908318 | 594..815 | 100 | <- | Minus |
| X | 15908537..15909124 | 5..593 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:42 Download gff for
FMO02132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15801892..15802066 | 816..987 | 98 | <- | Minus |
| arm_X | 15802130..15802351 | 594..815 | 100 | <- | Minus |
| arm_X | 15802570..15803157 | 5..593 | 99 | | Minus |
