FMO02133.5prime Sequence
1216 bp (970 high quality bases) assembled on 2008-05-06
> FMO02133.5prime
CAGTCGACATGTCTGGCGAGGAAACGTCTGCCGATCGCAATGTCGAGATC
TGGAAAATCAAGAAGCTCATCAAGAGCCTGGAAATGGCCCGCGGCAATGG
AACCAGCATGATTTCTTTGATTATTCCGCCAAAGGATCAAATCTCGCGCG
TCAGCAAGATGTTGGCCGATGAGTTTGGAACGGCGTCCAACATCAAGTCG
CGTGTAAATCGGTTGTCCGTCCTCGGTGCCATTACGTCGGTACAGCACAG
ACTCAAATTATACACCAAAGTGCCTCCCAACGGTTTGGTCATCTACTGCG
GCACAATAGTCACAGAGGAGGGCAAGGAGAAGAAGGTGAACATAGACTTT
GAGCCATTCAAGCCCATAAACACGTCGCTCTACCTCTGCGACAACAAGTT
CCACACGGAGGCCCTCACTGCCCTGCTCGCCGACGACAACAAATTTGGAT
TCATCGTGATGGATGGTAACGGAGCGCTATTCGGTACCCTTCAGGGCAAC
ACGCGCGAGGTGCTCCACAAGTTCACCGTCGATCTGCCGAAGAAGCACGG
TCGTGGTGGTCAGTCCGCCCTTCGTTTCGCCCGTCTGCGTATGGAGAAGC
GCCACAACTACGTGCGGAAGGTCGCCGAGGTGGCCACCCAGCTCTTCATC
ACGAACGACAAGCCCAACATTGCCGGACTCATCCTGGCTGGTAGTGCGGA
TTTCAAGACTGAGCTTAGTCAGTCTGATATGTTCGATCCTCGTTTGCAAT
CAAAAGTCATCAAGCTGGTGGACGTGTCGTATGGTGGGGAAAACGGTTTT
AACCAGGCCATTGAACTGGCGGCCGAATCATTGCAGATCGTTAAATTCAT
ACAGGACAAGAAACTCATTGGTCGCTACTTTGATGAAATTTCTCATGATA
CTGGCAAATACTGTTTTGGAGTGAAGGACACTTTGCGGGCACTGTACCTG
GCTCTGTAAAGAACTCTCATTTGTTGGGAGAACCTGGATATTCAACGTTA
TGTTCTCAGATCATGCCACTCGACGTCACGACAGTATACATTGACGCCCG
AACAGGAAAGGACAGTCGGCACTTCCATTGACAGGAAGCGGGGTAAATTG
GACCTGATTCGACTCACCGCTGCTGATGCTGGCCACAACACTACAAATTT
CGGCCTACTGGAATTAACGGATAAGTCAGGAGGATCGCTCTGCGCAGAGA
GTTCGCGGGGGAATAC
FMO02133.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eRF1-RI | 1873 | CG5605-RI | 211..1338 | 9..1125 | 5020 | 97.3 | Plus |
| eRF1-RH | 1806 | CG5605-RH | 211..1338 | 9..1125 | 5020 | 97.3 | Plus |
| eRF1-RG | 1739 | CG5605-RG | 185..1312 | 9..1125 | 5020 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20350557..20351028 | 269..740 | 2360 | 100 | Plus |
| 3L | 28110227 | 3L | 20350304..20350480 | 94..270 | 870 | 99.4 | Plus |
| 3L | 28110227 | 3L | 20351094..20351248 | 741..895 | 745 | 98.7 | Plus |
| 3L | 28110227 | 3L | 20349121..20349206 | 9..94 | 430 | 100 | Plus |
| 3L | 28110227 | 3L | 20351324..20351435 | 897..1008 | 405 | 94.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:03:40 has no hits.
FMO02133.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:07:09 Download gff for
FMO02133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5605-RA | 722..1810 | 1..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:37 Download gff for
FMO02133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eRF1-RG | 247..1335 | 1..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:19 Download gff for
FMO02133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eRF1-RG | 177..1265 | 1..1083 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:19 Download gff for
FMO02133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20350559..20351028 | 271..740 | 100 | -> | Plus |
| 3L | 20349113..20349206 | 1..94 | 95 | -> | Plus |
| 3L | 20350305..20350480 | 95..270 | 99 | -> | Plus |
| 3L | 20351094..20351249 | 741..896 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:37 Download gff for
FMO02133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20342213..20342306 | 1..94 | 95 | -> | Plus |
| arm_3L | 20343405..20343580 | 95..270 | 99 | -> | Plus |
| arm_3L | 20343659..20344128 | 271..740 | 100 | -> | Plus |
| arm_3L | 20344194..20344349 | 741..896 | 98 | -> | Plus |
