FMO02134.5prime Sequence
1200 bp (911 high quality bases) assembled on 2008-05-06
> FMO02134.5prime
CAGTCGACATGGCCAAACAAGTGGCTGATTACCAGTGCAGTAAGCTCCAG
TTGTACCAAAAGCTGGCACTGGTCGTAATCCTGGGAGCAGTGCTTTTCTC
GCTCCCGGCGTTGTGCGCCGGCCAGGGCAATCCCAGTTTCAAATACTCGC
GGGAAGCCAACGAAAACTTCGATCCGCAGAAGGCTCCACGGGCGGAGCAC
CATCATCATCATGATCATGACCACGATCATGGACACCACCACCACGGGCA
CGATCATGATCATGACCACGACCACGGGCATGATCATGGACACCATCATC
ACGGGCACGATCATGATCATGACCACGACCACGGACACCATCATCACGGG
CACGATGAAAGGCACACCAAGGCAAAGCCGGATTTGGATATGAGCACCAT
TTGGTTGCACTCGATCGGCTCAACTCTTCTTATCAGTGCCGCTCCCTTCG
TGCTGCTGTATATCATTCCCCTAGACAACAGTGAGGCGATGAAGCCGCGT
CTCAAAGTGCTTCTGGCCTTTGCTTCTGGCGGTTTGTTGGGTGATGCCTT
TCTGCACTTGATTCCTCATGCCACGCATCCACACAGTCATGGAGAACACG
GCCACGATCACGGCCATGATCACCATCATCATCATGATGGCGAGGAGCAT
GAACATGGTCACAGCCACGATATGAGCATTGGTCTGTGGGTCCTTGGAGG
AATCATTGCCTTCCTTTCAGTGGAGAAACTGGTACGCATTCTAAAGGGCG
GTCATGGAGGACACGGCCACAGCCATGGAGCACCAAGCCAAAACCAGTGC
CTGCTAAGAAAAAGTCCTCTGACAAAGAAGACAGCGGAGATGGAGACAAA
CCGGCAAAGCTAGCCAAGATCAAGTCCAAGATACCAGAAGCGGATCCAGA
CGGGAAGTGAGATTTCCGGCTACTTGAATTTGGCGGCGGACTTTGCTCAC
ACTTCACGATGGCCTGCCATCGGCGCCTCCTATTTGGCGGGCACAGCATT
GACATGTGACCACTATCACTATTCTGCTGCACGAGTGCCCCATGAAATGG
TGACTTGCCAATTCTTAAAAGTCTAGCCTGATCAGACGAAGGTCATTGCT
TCTTGCACCGTCCAGGCGCTCGGAACCTTGGCGGCACACGCCTAATCTCT
GGAACCTGAAGCAGACTGATCGCCATGAACTTGCCCTTCCAACGGGACTT
FMO02134.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Catsup-RA | 1698 | CG10449-RA | 85..1222 | 9..1134 | 5000 | 97 | Plus |
| Catsup-RA | 1698 | CG10449-RA | 273..363 | 248..344 | 250 | 84.5 | Plus |
| Catsup-RA | 1698 | CG10449-RA | 324..420 | 197..287 | 250 | 84.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19042379..19043069 | 387..1067 | 2820 | 97.3 | Plus |
| 2L | 23513712 | 2L | 19041946..19042324 | 9..387 | 1895 | 100 | Plus |
| 2L | 23513712 | 2L | 19042162..19042224 | 282..344 | 240 | 92.1 | Plus |
| 2L | 23513712 | 2L | 19042219..19042281 | 225..287 | 240 | 92.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:49:15 has no hits.
FMO02134.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:06:58 Download gff for
FMO02134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10449-RA | 233..1317 | 9..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:04 Download gff for
FMO02134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Catsup-RA | 85..1169 | 9..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:04 Download gff for
FMO02134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Catsup-RA | 85..1169 | 9..1083 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:04 Download gff for
FMO02134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19041946..19042324 | 9..387 | 100 | -> | Plus |
| 2L | 19042380..19043085 | 388..1083 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:04 Download gff for
FMO02134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19041946..19042324 | 9..387 | 100 | -> | Plus |
| arm_2L | 19042380..19043085 | 388..1083 | 96 | | Plus |
