FMO02140.5prime Sequence
1214 bp (1036 high quality bases) assembled on 2008-05-06
> FMO02140.5prime
CAGTCGACATGCGCCTGTTTCCAGTCCGATTCTCAGCCGCCTCCTCGTCG
ATGGCGAGTTTGGCCAAAATGCTCGACTTTTACTCGGGCTTCAACCCCTC
GCCCCTCTCGATAAAGCAGTTCATGGACTTTGGTCAGAATGCCTGCGAGA
AGAAATCGTACATATTCCTGCGCAAGGAACTGCCTGTTCGACTGGCGAAT
ATCATGAAGGAGATCGCCCTTCTGCCGGATAACCTGTTGCACACCAGATC
CGTAAGCGAAGTTAGTTCCTGGTATGTCAAGAGTTTCGAGGATGTGCTGG
TGTACGAGAAAGCAGAGCCCACCCACGACAATCTGCAAAAGTTTGTGGCC
GATTTGGATCTCATTAGGAATCGGCACAACGATGTGGTGCAAACGATGGC
CCAGGGTGTGATCGAAATGAAGGAGAACGAGGGCGGCCAGGTGGATGCGC
CTACAGAGAGTTCCATTCAGTACTTTCTCGACAGGCTCTACATGTCTCGC
ATCAGCATTCGAATGCTGATAAATCAGCACACCCTTCTCTTTGGCGGAAA
TCCACATGCGGGTGGCCGCCATATTGGTTGCCTGGATCCCGCCTGTGATC
TGTCGGATGTGGTTCGCGATGCTTACGAGAATGCGCGATTCCTATGCGAT
CAGTACTACCTGACCAGTCCGGCATTGGAGATCCAGCAGCACAGCAGCGA
GCCTGGAGACAACCTGCCCATCCGCACCGTTTACGTGCCCTCGCACCTGT
ACTACATGCTTTTCGAGCTCTTCAAGAACTCTATGCGAGCTGTTGTAGAG
CACCATGGCCATGACAACAATGACACATTGCCCCCCTTGAAGTAGCCATT
TGCAAGGGCAAAGGAGGACATCTGTGTGAAAATTTCTGACCAGGGAGGCG
GCATTCCCCGCTCCCAGACCGATCAGCTCTTCAAGTATATGTACAGCACA
GCGCCGCAGCCCTCGAAGTCGGATCTGCATACGTGCCATTAGCGGGCTAT
GGATACGGTCTGCCGATCTCAAGGCTTTACGCCCGCTATTTCAGGGCGAC
TTGGTGCTGCTCTCCTGCGAAGGATTCGGGACGAATGCATCATCTATCTA
AGGTTCTGTCCGACGAGGCAACGATGGCTGGCGATCTTCCACAGACAGCT
AGTCCATCGGCCACGTGTCCAGGGGTGACGGTTCCCATTCAGGTAAATAC
GCCTTTATAGGATC
FMO02140.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:01:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdk-RC | 2732 | CG8808-RC | 810..2019 | 7..1202 | 5375 | 97.1 | Plus |
| Pdk-RA | 2080 | CG8808-RA | 810..2019 | 7..1202 | 5375 | 97.1 | Plus |
| Pdk-RD | 2440 | CG8808-RD | 810..1952 | 7..1143 | 5355 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:01:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9432490..9433062 | 532..1101 | 2530 | 98.1 | Plus |
| 2R | 25286936 | 2R | 9431970..9432180 | 132..342 | 1055 | 100 | Plus |
| 2R | 25286936 | 2R | 9432235..9432425 | 341..531 | 955 | 100 | Plus |
| 2R | 25286936 | 2R | 9427248..9427375 | 7..134 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:01:57 has no hits.
FMO02140.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:07:19 Download gff for
FMO02140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8808-RB | 801..1945 | 1..1139 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:41 Download gff for
FMO02140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdk-RA | 804..1948 | 1..1139 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:15 Download gff for
FMO02140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdk-RA | 804..1948 | 1..1139 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:15 Download gff for
FMO02140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9431971..9432178 | 133..340 | 100 | -> | Plus |
| 2R | 9432235..9432425 | 341..531 | 100 | -> | Plus |
| 2R | 9427242..9427373 | 1..132 | 97 | -> | Plus |
| 2R | 9432490..9433064 | 532..1102 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:41 Download gff for
FMO02140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5314747..5314878 | 1..132 | 97 | -> | Plus |
| arm_2R | 5319476..5319683 | 133..340 | 100 | -> | Plus |
| arm_2R | 5319740..5319930 | 341..531 | 100 | -> | Plus |
| arm_2R | 5319995..5320569 | 532..1102 | 97 | -> | Plus |
