FMO02142.5prime Sequence
1226 bp (1037 high quality bases) assembled on 2008-05-06
> FMO02142.5prime
CAGTCGACATGGGTAAGGAAAAGGCGGCCGCCTCCTACAGCATTGGCGAC
CTGGTGTTCGCCAAGGTGAAGGGCTATCCGCCCTGGCCGGCCAAAATCAC
CAAGAGCAACAACAACAAGAAGTACAATGTTTACTTCTACGGCACGGGCG
AAACGGCCAACATCAAGTTGGAGGATCTGTTCCCGTACGCCAGCAACAAG
GAGCGCTTCGCCACCGAGAAGATCATGAAGCGGGCCAAGTTCATCGAGGC
CATCGATCAGATCGAGAGCGCCTTGCGCGGCGAGGACTCGGCGCCCATTG
ATTTGCTCGACGGCGCGGAGCCAGTTGCTCCGCCCACAACTGGTGATGGC
GTCAAGACGGAGGAGCCCAAGCCGGAGCCGGGACCGGAGCCAGCCACTGC
TGCACCAGTCGCAGCAGCGGCCGAGAAGCCCAAGAAGAGCGGCACCCGGA
AGACCAAGGCACCACCGCGCCATGTGGACGGGGATAGTGAAGCAGGCGCG
GAACTAGCACCTCCGCCGGCCAAGCGAAGGGTTCCCACCGAGGGTCTGGC
TACCGCCGCAGCCATCCCCGCTGCTCCGGCTGCGGCGACCCCCACCTCCA
GCAAGAAATCAGTGAAGAAATCCAAGCCCACGGCTGCAGTAACTCCGATT
CAGAAGCGGTCGCGGCCAGTCAATAACATCCGGAACGAGATGCTCATGGT
GTACATGCCCACAGCCAAGTGTTTGGGAATCGTTATAAACTACAAAAAGC
CGGAGAGTTTCGAAAGCGCCGCTGCCGAGGAAGCCTGGATGGAGAACGCC
CGCAAAGAAGCCTTGGAGCTCAAACTGAAACTAGAGAGCGGCCAAATCAA
TCCGGAGTCCATGCCCGATAGGATCGTGGTGGAGCCACACGCAGCGAAAT
ACCCAAGCAGGAGGCTTTGCGATTCATCGAGGAGCTCATTGAGCACGAGG
ATGCCCTCTTCATGGAGCGAGACTTCATCCAACTTTCCCAGCAGCTGCGC
GAATGTTTGGGCCTGCGCGCGCCAATGTGGCAATGCCTGAGAATCTCGAG
CAGTTCAGAGGTGGAGTCCACCAAGTTGATGCTGCTGCGCATCAGAGTGC
TGACCAAATGCCCGCACTCGCCGTATGTGGCCAATCTGGAACTCTGGAAT
TGGACTGTTCGACAAAGGTGAGATTCAAGGAAGGGCGCAACCTATCTGCC
CAAGGCTCTCTCTCTTCGTGTGAGAT
FMO02142.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7946-RB | 1884 | CG7946-RB | 124..1323 | 5..1189 | 5320 | 97.3 | Plus |
| CG7946-RA | 2042 | CG7946-RA | 282..1481 | 5..1189 | 5320 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30052795..30053464 | 5..674 | 3335 | 99.9 | Plus |
| 3R | 32079331 | 3R | 30053544..30053967 | 675..1091 | 1780 | 97.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:59:16 has no hits.
FMO02142.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:07:20 Download gff for
FMO02142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7946-RA | 278..1386 | 1..1100 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:58:08 Download gff for
FMO02142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7946-RA | 278..1386 | 1..1100 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:59 Download gff for
FMO02142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7946-RA | 278..1386 | 1..1100 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:59 Download gff for
FMO02142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30052791..30053464 | 1..674 | 99 | -> | Plus |
| 3R | 30053544..30053978 | 675..1100 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:58:08 Download gff for
FMO02142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25878513..25879186 | 1..674 | 99 | -> | Plus |
| arm_3R | 25879266..25879700 | 675..1100 | 97 | | Plus |
