Clone FMO02143 Report

Search the DGRC for FMO02143

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:21
Well:43
Vector:pMK33-CFH-BD
Associated Gene/TranscriptRpS12-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO02143.5prime Sequence

443 bp (443 high quality bases) assembled on 2008-05-06

> FMO02143.5prime
CAGTCGACATGGCCGACGTTGATGTTGATGTTCCCTCCGCTGCCCCTGTG
CTCGATGGCGCCATGGACATTAACACTGCCCTCCAGGAGGTCTTGAAGAA
GTCCCTGATCGCCGATGGACTCGTCCATGGCATCCACCAGGCCTGCAAGG
CCCTGGACAAGCGTCAGGCTGTTCTGTGCATCCTAGCCGAGTCCTTCGAC
GAGCCCAACTACAAGAAGCTGGTTACCGCCCTGTGCAACGAGCACCAGAT
CCCCCTTATCCGCGTGGACTCGCACAAGAAGCTGGGCGAATGGTCCGGTC
TGTGCAAGATCGACAAGGAGGGCAAGCCCCGCAAGGTGTGCGGCTGCTCC
GTGGTCGTGATCAAGGATTTCGGTGAGGAGACACCCGCTTTGGACGTGGT
TAAGGACCATCTCAGGCAGAACAGCGCAAGCTTTCTAGACCAT

FMO02143.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
RpS12-RB 613 CG11271-RB 69..485 9..425 2085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13024366..13024634 157..425 1330 99.6 Plus
3L 28110227 3L 13023732..13023867 26..161 680 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:20:32 has no hits.

FMO02143.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:07:22 Download gff for FMO02143.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11271-RC 45..471 1..429 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:04 Download gff for FMO02143.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS12-RB 62..488 1..429 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:45 Download gff for FMO02143.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS12-RB 62..488 1..429 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:45 Download gff for FMO02143.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13023732..13023866 26..160 100 -> Plus
3L 13024370..13024637 161..429 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:04 Download gff for FMO02143.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13017470..13017737 161..429 99   Plus
arm_3L 13016832..13016966 26..160 100 -> Plus