FMO02144.5prime Sequence
907 bp (907 high quality bases) assembled on 2008-05-06
> FMO02144.5prime
CAGTCGACATGAATCGCTCCGACGGATTGGTGCGTCGCTCGGTGAAACCC
CGCGAAAACGGTGGGGCGGAGGGTGGGTTGAATGCCAACACGCCGGACGA
CAACCAGGATGCACTGGACAACCTAAAGGACCAGGAGGACAATATCGACG
ATGGCGACTCCAAGGAAACACGACTAACGCTCATGGAGGAGGTTCTGCTG
CTGGGACTCAAGGACAAGGAGGGCTACACATCTTTCTGGAACGACTGCAT
ATCAAGCGGCTTGCGCGGATGCATTCTCATAGAGCTTGGACTGCGAGGTC
GCGTGATGATCGAGAAATCTGGAATGCGGCGACGTGGTCTATGTACAAGG
AAATTAATACTGAAATCGGATCAGCAGACGGGAGACGTTCTACTCGATGA
GGCACTTAAACACATTAAGGAAACAGATCCCCCGGAGACGGTGCAGAGCT
GGATTGAATATCTTAGTGGTGAAACCTGGAATCCGTTGAAATTGCGCTAC
CAACTGAAAAATGTACGCGAACGTCTGGCCAAAAATCTGGTGGAGAAGGG
TGTGCTCACGACGGAAAAGCAAAATTTTCTACTCTTCGATATGACGACAC
ATCCGCTGAGCGACAATGTTGTCAAATGTCGCCTGGTGAAGAAGATCCAA
GATTCTGTGCTCTCCAAGTGGGTCAACGATCCACAGCGCATGGACAAGCG
GATGCTGGCGCTTATCTTCCTGGCGCACGCCAGCGATGTGATCGAGAACG
CCTTCGCGCCGCTGAATGATGACGACTATGAGTGGCCATGAAGCGGGTGC
GGGAGCTGCTGGATCTCGACTTCGAAGCCGAGTCGGCCAAGCCGAATGCG
AACGAAATTCTGTGGGCGGTGTTCATGGCGTTCACGAAAGCAAGCTTTCT
AGACCAT
FMO02144.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sau-RE | 1720 | CG7085-RE | 549..1430 | 9..889 | 4385 | 99.9 | Plus |
| sau-RA | 2395 | CG7085-RA | 549..1430 | 9..889 | 4385 | 99.9 | Plus |
| sau-RD | 2585 | CG7085-RD | 728..1609 | 9..889 | 4385 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2229876..2230123 | 643..889 | 1190 | 99.6 | Plus |
| 2L | 23513712 | 2L | 2227069..2227282 | 9..222 | 1070 | 100 | Plus |
| 2L | 23513712 | 2L | 2229637..2229813 | 468..644 | 885 | 100 | Plus |
| 2L | 23513712 | 2L | 2229264..2229394 | 220..350 | 655 | 100 | Plus |
| 2L | 23513712 | 2L | 2229455..2229578 | 348..471 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:02:06 has no hits.
FMO02144.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:07:23 Download gff for
FMO02144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7085-RE | 542..1428 | 1..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:44 Download gff for
FMO02144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)s5379-RD | 723..1609 | 1..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:19 Download gff for
FMO02144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sau-RD | 723..1609 | 1..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:19 Download gff for
FMO02144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2229878..2230123 | 645..889 | 99 | | Plus |
| 2L | 2229638..2229813 | 469..644 | 100 | -> | Plus |
| 2L | 2227064..2227281 | 1..221 | 98 | -> | Plus |
| 2L | 2229266..2229393 | 222..349 | 100 | -> | Plus |
| 2L | 2229457..2229575 | 350..468 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:44 Download gff for
FMO02144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2227064..2227281 | 1..221 | 98 | -> | Plus |
| arm_2L | 2229266..2229393 | 222..349 | 100 | -> | Plus |
| arm_2L | 2229457..2229575 | 350..468 | 100 | -> | Plus |
| arm_2L | 2229638..2229813 | 469..644 | 100 | -> | Plus |
| arm_2L | 2229878..2230123 | 645..889 | 99 | | Plus |
