FMO02145.5prime Sequence
1194 bp (1016 high quality bases) assembled on 2008-05-06
> FMO02145.5prime
CAGTCGACATGTTCACCTACCAACTGGGGCTTGTGGTCCGCTGTGCGCGG
CAGAAGCCGCTGCTCCTATGGGCGCCCGCCTGCCACATGAGCGGTCTCAG
TCCGCTGAAGGAATATGAGAAGCGTGTTAGTTCTGGCCAACTGATGACCG
ACAACAGGCAGCTGCAGACGATGAAGGAGCTGGATGCGCTGTACCACAAG
ATTCAGGGGTATAAACCCAGCTACAGGGCGGGCGGTGGCGGCGGAGGATT
CTTCAGTTCAATCTTTGGTAGGAAATCTTCCACCGAAGATGACGATCAGG
ATGATCCTAACGCTGGCAGTCACGCTCCTCAGGGTCTGTACCTGTACGGC
AGCGTGGGTGTGGGCAAGACCACTCTGATGGACCTGTTCTTCGACTGCTG
TACCCAAATTCATCGAAAGCAGCGCGTCCATTTTACTTCGTTCATGAACA
CCGTGCACACCCGCATCCACGAGGCCAAGCAGAGACAAGGACCTGTTGAC
CGTGCCTTTAATTCTGAAAAACCAGCACCATTTGATCCCACAAAACCGGT
TGCTGACCTGATTGCCAGTGAGTCCTGGTTGATTTGCTTCGATGAATTTC
AGGTGACGGACATAGCCGACGCCATGGTGCTAAAGAGATTGTTTACGCAC
CTTTTCCGCCATGGCATTGTGGTTGTGGCCACCAGCAATCGGCATCCAGA
GGATCTGTACAAGAACGGACTGCAGCGCACGAACTTTCTGCCCTTCATTG
CGTTACTTCAGCGTCGCTGTAAGGTGTCCCAGTTGGATTCTATTGACTAC
CGACGTATAGCCCAATCTGGTGACACCAACTACTTCGTCAAAGGCCAAAC
GGATGCGGACGGCAGTATGAATCGCATGTTCAAGATCCTGTGCGCCGAAG
AAAACGATATTATCCGGCCGCGAACCCTGACTCATTTCGGAGAGATCTGA
CCTTCAATCGCACGTGTGGCAGGTACTGACAGCACCTTCTCGGACTCTTG
TGATCGCCCTTTGCTGGCAGTGATTTCTTAACGAATATCGCAATTCTTTC
ACCGTCCTCATCCGAGATGGTGCCCAGCTGACTGATGTGAGCACAGATGC
ACGATTATCCGCTCATAGAATCCCTTACAATTAACCGAGTGCGTGGGATT
CATCGACGTTGCCTGAACTGTCAGCTTATCTGGGAAGTTCCAAA
FMO02145.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8520-RB | 1734 | CG8520-RB | 150..1299 | 9..1145 | 5225 | 97.8 | Plus |
| CG8520-RA | 2134 | CG8520-RA | 550..1699 | 9..1145 | 5225 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12424166..12424768 | 408..1007 | 2805 | 98.8 | Plus |
| 2R | 25286936 | 2R | 12423710..12424108 | 9..407 | 1995 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:20:41 has no hits.
FMO02145.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:07:24 Download gff for
FMO02145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8520-RA | 487..1658 | 1..1154 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:07 Download gff for
FMO02145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8520-RA | 541..1712 | 1..1154 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:49 Download gff for
FMO02145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8520-RA | 541..1712 | 1..1154 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:49 Download gff for
FMO02145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12423701..12424108 | 1..407 | 99 | -> | Plus |
| 2R | 12424166..12424768 | 408..1007 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:07 Download gff for
FMO02145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8311206..8311613 | 1..407 | 99 | -> | Plus |
| arm_2R | 8311671..8312273 | 408..1007 | 99 | -> | Plus |
