FMO02146.5prime Sequence
1189 bp (1046 high quality bases) assembled on 2008-05-06
> FMO02146.5prime
CAGTCGACATGGATGCCCAGGAGAATAGGAGTGAACAGTCGGGACAATCG
GGCGACCACGAAGAGCACGAGGAGCGCCGGATCCGTACGGACAGCGAGAG
TTCCGTGGAAAGCATGACGCGTTTCGTGCTGCCCAGCTTGGATGGTACTC
CGCCGAAAATTGTGACCCTGGACGAAGTGTCCAGCATGTTCAAGAATTTG
CGCAACATGGAGCTGGCCCACGAGATAGCCCTCAATCCGGACTTCAAGCT
GCAGAAGTACGAGCCGCCCTCGGATAGTTTGGAGGGCGCCATCAAGAAGA
TGGTGCACAAGGCCTTTTGGGATCTGCTGCGTGTGCAGCTGGACCGCCAG
CCGCCATCGTATGATCAGGCCATCCGGCTGCTGGCTGAGATCAAGGAGTG
CTTCCCGCAGCTGCTGTCGCCCAACAACGAACGTGCCCTGGCCCACATCA
ACGAGGTGCTGGATGACTCCGTCATCCGCCAGCAAGCGGAGCGGGGTACC
CTGGACTTTCGAGCATATGCCAACTTTGTGATCAACATCCTGTCGCGATC
CTGTTCGCCAGCTAGGGACGAAGCAGTGGCCGCTCTGCGCAAGATCGACG
ATGTGGTGGACACGTTTCGCTGCATTCTCGAGCTGATGACGCTGATGAAG
CTGGATATGGCCAACTTTATGCTTCGACTGGCGCGCACCGAAATCGCTGC
CAATTCGGTGCAGTATGAGAAGGAGAAGTTTAGCAAGTACTTGCGCGAGT
TCCATGGAAATGTTGGTTTTCCGGCCACTGAGGATTGGCTGCAGCGTCAC
CGGTCCGGTAGCAGCGATGATGAGACCATTTACAATGCCTACATGCAGCT
GATTGACTATCCGGCCGACAAGGAGTTCCCGGAGCTGTTGCGCATCGACA
AAGAGCGCTTCGCCGGCCTAAGTTGGCGAGCCCAGCGCTTGATCCTGTGC
GCCTCGCTCATCTCGTGGCCCAGGCATGCTATCATATCGCAGCGCGCGAG
ACGCATCAGCTGGCCAGCAGCTGGACATCATGTGCAGAAATCAGAACAGA
CAGTTGCTCTACATGAAAGCTGCTACGAGCGATCGCTCTTTGTGAACAGC
TGGAACAGGAACTGCCTGCCTGAGGGATGCGTACGGGCTCAGACCGAGGT
CTAACTGCCACAAACCTCCCGGGTCCAATTGTAGGACCA
FMO02146.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16721-RC | 2321 | CG16721-RC | 235..1345 | 9..1098 | 5005 | 97.8 | Plus |
| CG16721-RA | 2546 | CG16721-RA | 460..1570 | 9..1098 | 5005 | 97.8 | Plus |
| CG16721-RB | 2442 | CG16721-RB | 356..1466 | 9..1098 | 5005 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5881384..5881874 | 276..766 | 2440 | 99.8 | Plus |
| X | 23542271 | X | 5881053..5881321 | 9..277 | 1345 | 100 | Plus |
| X | 23542271 | X | 5881934..5882170 | 762..995 | 1035 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:20:25 has no hits.
FMO02146.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:07:11 Download gff for
FMO02146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16721-RA | 471..1581 | 9..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:36 Download gff for
FMO02146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16721-RB | 356..1466 | 9..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:45 Download gff for
FMO02146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16721-RB | 356..1466 | 9..1098 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:45 Download gff for
FMO02146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5881053..5881321 | 9..277 | 100 | -> | Plus |
| X | 5881386..5881870 | 278..762 | 100 | -> | Plus |
| X | 5881935..5882235 | 763..1050 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:36 Download gff for
FMO02146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5775086..5775354 | 9..277 | 100 | -> | Plus |
| arm_X | 5775419..5775903 | 278..762 | 100 | -> | Plus |
| arm_X | 5775968..5776268 | 763..1050 | 95 | -> | Plus |
