FMO02147.5prime Sequence
1232 bp (1028 high quality bases) assembled on 2008-05-06
> FMO02147.5prime
CAGTCGACATGGCGGGTTTAGCGGCTAGATTAACGGTTAAAAACTGCACA
ATAATCGCCCAAAGGTCGAGTGTGATCGTCGGTGTTGGTCGATCGGCCAG
ATTTTCCAGTAGTTCGTCACAAATGGGCAGAATTCCGGGACACAAAACTC
GACGTCTGCTTACTATTGTAGGCGGTAGTGCTGTTTCTTTAGCCGCCCTG
GCGGCTTTCATCAAACTACGTTCCGCGGAAAACCCTGTGAATGCAGTTAG
CCTAAAAAGGCGCATGCGCGACGATAGCGAGCTGGAGAACGTAAAACTGA
CGGCCCGGGAGCGCCGCTTCATCAAGTTTGCATCCGTGGAGTACGATGAC
CAGCTCTACATGACACCGCAGGACTTCCTAGACTCCGTTGTTGAGCAGGA
GCCCAGACCTCGCTTGAAACGACGCCAGTTGTCCAGCGATGAGGTGGATA
AATACAAGGAGAACACGCCTGCTTTGAAGAAGGGTTCCACTCGTCTGTTT
CGCAACCTAAGGGACAAGGGCATTGTCTCCTACACGGAATATTTGTTTTT
GCTGTCCATTCTAACAAAGCCGAAATCAGGATTCCGAATCGCATTCAACA
TGTTCGACACGGATGGAAATCAGCGCGTTGACAAGGACGAATTTCTAGTG
ATAATTTCCATTTTGGCCGGCGCTTTAAAAGACACTCAAAATGTCGATCC
ACAAACCAAGCGAATTATGGAGCGCATTTTCAGTGGCGCTTGAAGGAGAA
GCACGGCGAGCAAGAGCCGGAAGAGGAGCTCGCAACGCCCACTCCCCTGG
AGAACTATGTAAACGATGGCGAGGGTCTGCAGCGGCGTCACATGGTGGCC
ACCACACTGCAGCTGCACTTCTTCGGCAAGCGGGGCACTGGGGTGATCAA
CTACGATACTTCTACCGCTTCATGACACCTGCAGACGGAGGTGCTGGAGC
TGGAGTTCCACGAGTTCTCCAGGGCAACAGCGTCATCAGCGAGCTGGACT
TTGCCAAATCCTGCTGCGTACACGTACTTGGCCACCGACGAATATGATGT
CTTTCTGGACGCCTGCCTCGAGCGGTCAGATGAAAAGGACATATCCTTTC
ACGATTCCGCGACTTTGTCACTTCCCTCCACAATCTGATGACTTCCAAAT
CGCCCATGGCAGTTAACCGCTTGGCGGAATAAGAGAACAATTTCACAAGA
GATGATTTTCGGCCGCGGCGGTGTCAGAAAAA
FMO02147.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4662-RA | 1830 | CG4662-RA | 62..1225 | 3..1154 | 5335 | 98 | Plus |
| CG4662-RB | 2279 | CG4662-RB | 62..1225 | 3..1154 | 5335 | 98 | Plus |
| CG4662-RC | 1754 | CG4662-RC | 62..775 | 3..716 | 3555 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19847372..19847635 | 3..266 | 1305 | 99.6 | Plus |
| 3R | 32079331 | 3R | 19852021..19852385 | 801..1154 | 1040 | 92.6 | Plus |
| 3R | 32079331 | 3R | 19850011..19850153 | 266..408 | 715 | 100 | Plus |
| 3R | 32079331 | 3R | 19850209..19850320 | 409..520 | 560 | 100 | Plus |
| 3R | 32079331 | 3R | 19850870..19850956 | 568..654 | 420 | 98.9 | Plus |
| 3R | 32079331 | 3R | 19851832..19851918 | 717..802 | 385 | 98.9 | Plus |
| 3R | 32079331 | 3R | 19851064..19851130 | 650..716 | 335 | 100 | Plus |
| 3R | 32079331 | 3R | 19850763..19850811 | 519..567 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:20:39 has no hits.
FMO02147.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:07:12 Download gff for
FMO02147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4662-RB | 48..1220 | 1..1161 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:41 Download gff for
FMO02147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4662-RB | 60..1232 | 1..1161 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:52 Download gff for
FMO02147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4662-RB | 60..1232 | 1..1161 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:52 Download gff for
FMO02147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19847370..19847635 | 1..266 | 99 | -> | Plus |
| 3R | 19850012..19850153 | 267..408 | 100 | -> | Plus |
| 3R | 19850209..19850319 | 409..519 | 100 | -> | Plus |
| 3R | 19850764..19850811 | 520..567 | 100 | -> | Plus |
| 3R | 19850870..19850952 | 568..650 | 100 | -> | Plus |
| 3R | 19851065..19851130 | 651..716 | 100 | -> | Plus |
| 3R | 19851832..19851918 | 717..802 | 98 | -> | Plus |
| 3R | 19852023..19852392 | 803..1161 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:41 Download gff for
FMO02147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15676592..15676674 | 568..650 | 100 | -> | Plus |
| arm_3R | 15676787..15676852 | 651..716 | 100 | -> | Plus |
| arm_3R | 15677554..15677640 | 717..802 | 98 | -> | Plus |
| arm_3R | 15675931..15676041 | 409..519 | 100 | -> | Plus |
| arm_3R | 15673092..15673357 | 1..266 | 99 | -> | Plus |
| arm_3R | 15675734..15675875 | 267..408 | 100 | -> | Plus |
| arm_3R | 15676486..15676533 | 520..567 | 100 | -> | Plus |
| arm_3R | 15677745..15678114 | 803..1161 | 93 | | Plus |
