FMO02150.5prime Sequence
1211 bp (1039 high quality bases) assembled on 2008-05-06
> FMO02150.5prime
CAGTCGACATGTCGCCAAATTCTATGTGGATTTTCGGCCTCATAAGTGCT
CTGCTTCTGACTCTGGGTTCGACGGGGCTATCCTCGAAGGTTTTGGAGCT
CAGTGACCGGTTCATCGATGTGCGACACGAGGGCCAATGGTTGGTCATGT
TCTATGCCCCGTGGTGCGGCTACTGCAAGAAAACGGAGCCCATTTTTGCT
CTGGTGGCTCAGGCTTTGCATGCCACCAACGTTCGAGTGGGTCGCCTAGA
TTGTACCAAGTATCCGGCGGCGGCGAAGGAGTTCAAGGTTCGTGGCTATC
CCACCATTATGTTCATCAAGGGCAACATGGAGTTCACCTACAACGGAGAC
CGCGGTCGCGATGAGCTGGTGGATTATGCCTTAAGGATGTCTGGGCCTCC
AGTTCAGCTGGTCACGCGAACGGAGAGTGTGGACATGCTAAAGGGATCCC
ATACGATATTTTTCATTTTCGTAGGCCAACAGGAGGGCGTGGTGTGGGAT
ACATACTATGCTGCAGCTGAAGGTTACCAAGAGCATGGATTTTTCTATGC
CACCAGCGAGGATATCGCTGCCCAACACTTTGACTTTGAGAAACTGCCAG
CGGTGATTGTCTACAAAGAAGAGCAGCACCACTTCTATCCGCATGGGCAT
TTGGCGCACGAAATGGACCCCAATGAAGTGAACGAAACCGTTTTCCAATG
GGTGAACGTGGAGAGGTTCACACTCTTCCCAAGGTCACTCGGTTCAACAT
CCACCAGCTGCTCAAGACAAACAAGTACTTGGTTTTGGCTGTGGTACAGG
AGGATAAGCTCAATCAGATAGCCACGCATGAGCTGGAGTTTCGGGACATG
GTGGAGGGCGTGATAAGAAAGCATAGGGCGCGATATCATGACAAATTCCA
ATTTGGATGGATTGGCGAGCCATCAATAGCACATTCCATTATCTTGGATC
ACTGCCCACGCCTCACTGATAGCGATAATTCGAGCACCCAACACCACTTC
ATACCCGAAGATGATCAATGCAAATGACTCCACAGGCACTGCACTTTTCC
TAAAATCCATCCGCACGAAAGTGCATGCTATGGGAGGAGAATACGTTCTT
TGTACGTGAATCGGCCTGTCGAATGCACGAGACTTAGATTTGGCGTGAAT
CCGTGTCCTGACATGTTCTTTCTGCGCCGTGTCCAATTGGGAATTCTCTC
TTATGATGCTC
FMO02150.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5027-RA | 1862 | CG5027-RA | 202..1317 | 9..1114 | 5220 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16229699..16230324 | 286..910 | 3080 | 99.8 | Plus |
| 3L | 28110227 | 3L | 16229404..16229645 | 48..289 | 1210 | 100 | Plus |
| 3L | 28110227 | 3L | 16230381..16230541 | 910..1065 | 540 | 96.3 | Plus |
| 3L | 28110227 | 3L | 16229301..16229340 | 9..48 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:07:58 has no hits.
FMO02150.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:07:31 Download gff for
FMO02150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5027-RA | 193..1286 | 2..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:55 Download gff for
FMO02150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5027-RA | 199..1292 | 2..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:02 Download gff for
FMO02150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5027-RA | 199..1292 | 2..1090 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:02 Download gff for
FMO02150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16229298..16229340 | 2..48 | 91 | -> | Plus |
| 3L | 16229405..16229643 | 49..287 | 100 | -> | Plus |
| 3L | 16229701..16230324 | 288..910 | 99 | -> | Plus |
| 3L | 16230382..16230569 | 911..1090 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:55 Download gff for
FMO02150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16222398..16222440 | 2..48 | 91 | -> | Plus |
| arm_3L | 16222505..16222743 | 49..287 | 100 | -> | Plus |
| arm_3L | 16222801..16223424 | 288..910 | 99 | -> | Plus |
| arm_3L | 16223482..16223669 | 911..1090 | 94 | | Plus |
