FMO02155.5prime Sequence
815 bp (815 high quality bases) assembled on 2008-05-06
> FMO02155.5prime
CAGTCGACATGCAGCACACGCTTATACGCTGCTTGGGCATGGCCCGGATA
TCCCTGATGCGTTTGCAGCCCAGACCCACAGTGGCAGCCTCCGGGGGACA
GGAAGCTGGGTCCATCTCGAAGCCAACACAACCGGTCAGTCGGTCTTTCG
CCTCGCTGCCGCAGGAGCAAGACAAGAAGGAGCAGAATGCCAGAGAGAGC
CTTAACCGCCTGCCTCGCCTAATGGACTTTCCAGAGATCGTGTGGCCATC
GGCGCTTAACTCGTTAAAAAATTGGATCACCATACAGTTCATAATTCGAC
CCTACTTCGACAGCGAGTTTCAACTCAAGGACTTCATATACGGCGCCAAG
CAAGCGCTGCAGGTAGTATCCTCAAAACTGATGGGCGGCGACTTAGACTC
CCTGGACAATCTTGTCTCGCCCGAGGCGATCGCAGAGCTTAGACCGGTAA
TCCAAAAACTGTCAATGACGCAACGGAGGCAGCTAGAAATCAAGGAGAGC
GACATATACCTCAGCTTTCCCTATCAGGTAGGTATTATGTTTGACGATGC
AAACGACAAGCTGCAGAAGCGTTTCGTAGAGATCACCATGGTGTTTCACG
TAATGCGTGGTCTATCCGAGATGCGGGAACGCGGCGAGGAAATACCCTGG
AACATGGGGACCCTTCCCGAGTACCAGGATAAGGTTTTCATCTGCAACTA
CCGTTTTGTAAAGGAGTTCACCGCTGGACACCAATCGGACTGGACCGTAA
ATGTGGCCAACCAGTTTAGGGCCATCGACCTTATTAACGAGACCATAGCA
AGCTTTCTAGACCAT
FMO02155.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3776-RB | 1004 | CG3776-RB | 104..892 | 9..797 | 3945 | 100 | Plus |
| CG3776-RA | 937 | CG3776-RA | 37..825 | 9..797 | 3945 | 100 | Plus |
| CG3776-RC | 751 | CG3776-RC | 37..556 | 9..528 | 2600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24969847..24970202 | 9..364 | 1780 | 100 | Plus |
| 2R | 25286936 | 2R | 24970251..24970549 | 361..659 | 1495 | 100 | Plus |
| 2R | 25286936 | 2R | 24970604..24970743 | 658..797 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:21:02 has no hits.
FMO02155.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:07:38 Download gff for
FMO02155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3776-RA | 70..866 | 1..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:49 Download gff for
FMO02155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3776-RA | 32..828 | 1..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:06 Download gff for
FMO02155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3776-RA | 32..828 | 1..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:06 Download gff for
FMO02155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24969842..24970200 | 1..362 | 98 | -> | Plus |
| 2R | 24970253..24970548 | 363..658 | 100 | -> | Plus |
| 2R | 24970605..24970746 | 659..801 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:49 Download gff for
FMO02155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20857365..20857723 | 1..362 | 98 | -> | Plus |
| arm_2R | 20857776..20858071 | 363..658 | 100 | -> | Plus |
| arm_2R | 20858128..20858269 | 659..801 | 98 | | Plus |
