FMO02158.5prime Sequence
1211 bp (1036 high quality bases) assembled on 2008-05-06
> FMO02158.5prime
CAGTCGACATGGAAGAAAACTTCGAACCGTACACCCCACAGTTGCTCAAG
AATCCCTTGTCCTATTCGGATCTCGTGAAAAAGGGCGTTGAGTTCGAGGT
CGACAATTCGCAGCAGAACCATGCCAGGGATCTGGGTCTCGACAGCGACA
GCGACAGCGACTACGAGGATGCGCTGGACGTGGACGGCGAGGAGCTACGT
TCACCGTGGACATATTCATTCGACGAACTGCGTGCGCTGATGAGCGAGAT
CGACGAAAACATTTACAAGCGGATCACTCGCACCGGTCACGTGGATCGGG
AGGCGGTGCCGAACAAGGCTAGGGTCTCGGTTCGGTACAGTGGCTACTGG
GAGGGCGAGACCGCTCCCTTCGACTCCTCCCTGCTGCGGGGCAGCAAATT
CGTGTTTGAAACTGGCCAGGGAACGGTGGTTGAAGGCCTGGAGGTCGCCG
TCCGCAGCATGCGTCCTTACGAGCAGGCCGAGTTTATAATCTCCTACAAG
CTGCTTTTCGGAGAACTCGGTTGCCCTCCGCGGATCAAGCCCAAGGCGGA
TGCGCTCTTTAAAGTGGAGGTAATTGACTACTCGCTCATAGGAGATGCGA
AGGGCATCGATGCTATCCCCCAAGAAGACCGCGACAAGTTTTGTGTGGTC
TATCCGAAGGCTGTCGACTTGCACCTACATGGCAAGGACTCGGTGAAGCT
CGGACGCTATCAGAGTGCAGCAACTGCCTTCGAACGGGCAGTGAGCTCAC
TGAACTACTGCCGAATGGCCCATGACGAGGAGGAGCGCAAGCAAACTGAA
CTGCTTACTACCCTGAACCAAAACCTGATGATCGTTTACAACAAGATGAA
CCAGCCGAAGCGCGCCTGCATCATGATGAAGGCCTTACGGCACCTGACCA
TGGGCAATCCGTCTTGCAAGGCGCTCTTCCAGGAGGGACGCGCCTGGCGC
TCTGGGCGAGTACACTTGGACCGCACGCTTACCTGCAGCGCAGCCAAGCA
GCGCGACAGGAGATCAGCGACGAGATTATCAGCATGACAGAGATCAGCAG
TATGAGGAGGCCCAGTCGCGGATTATGGCCACGTGCCTCTCTCGTAGAAC
TCAAGTCCGACGTCGCTAACGCCTTGCTCAGCCTGGAAAGAGCAAGAACG
AATTCATGTACAAAGGGAAATGTATTTGGCGTTAGAAACCACTCTCCGAA
ATATCTACCGG
FMO02158.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shu-RA | 1694 | CG4735-RA | 93..1233 | 9..1132 | 5040 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23842328..23843078 | 818..68 | 3740 | 99.9 | Minus |
| 2R | 25286936 | 2R | 23842024..23842252 | 1037..819 | 675 | 93.4 | Minus |
| 2R | 25286936 | 2R | 23843135..23843194 | 68..9 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:49:36 has no hits.
FMO02158.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:07:26 Download gff for
FMO02158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4735-RA | 86..1196 | 9..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:09 Download gff for
FMO02158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shu-RA | 93..1203 | 9..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:14 Download gff for
FMO02158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shu-RA | 93..1203 | 9..1104 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:14 Download gff for
FMO02158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23841960..23842252 | 819..1099 | 92 | <- | Minus |
| 2R | 23842328..23843078 | 68..818 | 99 | <- | Minus |
| 2R | 23843136..23843194 | 9..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:09 Download gff for
FMO02158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19729483..19729775 | 819..1099 | 92 | <- | Minus |
| arm_2R | 19729851..19730601 | 68..818 | 99 | <- | Minus |
| arm_2R | 19730659..19730717 | 9..67 | 100 | | Minus |
