FMO02159.5prime Sequence
1178 bp (1014 high quality bases) assembled on 2008-05-06
> FMO02159.5prime
CAGTCGACATGTTGACCAGGTCCATTTTATCCGTTGCCGTGTGTGGCCTC
CTCCTGTCGCCCCTCCTGCCCATCACCCGTGCGTCCCAGGAGGAGGACAC
CGGCAAACAGGACAAGCAGTTCACCGTGGAACTGGACCCAGAAACCTTCG
ACACTGCGATTGCCGGCGGCAATGTCTTCGTCAAGTTCTTTGCTCCATGG
TGCGGCCATTGCAAGCGTATTCAGCCGCTGTGGGAACAGCTGGCCGAGAT
CATGAATGTGGATAACCCCAAGGTGATCATCGCCAAGGTGGACTGCACCA
AGCACCAGGGACTCTGCGCCACGCACCAGGTTACCGGCTATCCCACACTG
CGCCTCTTTAAGCTGGGCGAAGAGGAATCGGTCAAGTTTAAGGGCACTCG
CGACTTGCCCGCCATTACCGATTTCATCAATAAGGAACTGAGCGCACCCG
CTGAGGCGGATCTGGGCGAGGTCAAGCGCGAGCAGGTCGAGAACCTTAAT
ATTGGCAAGGTGGTTGACCTTACCGAAGACACCTTTGCCAAGCACGTGTC
CACCGGCAATCACTTTGTCAAATTCTTTGCACCCTGGTGCAGTCATTGTC
AGCGTTTGGCACCCACGTGGGAGGACCTGGCCAAGGAGCTGATTAAAGAG
CCTACCGTAACTATCTCGAAGATCGACTGCACCCAGTTCCGTTCCATCTG
CCAGGACTTTGAGGTCAAGGGGTATCCCACTCTTCTCTGGATCGAGGATG
GCAAAAAGATTGAAAGTACTCGGGTGCTCGCGATCTGTCCACGCTGAAAA
CGTACGTGGAGAAAATGGTGGGCGTGCCACTGGAGAAGACCGCTGGCGAG
GCCGGCGATGAGAAGTGGTTATCGAGGAGGTTGCCGGCGAGGAGGACGCA
GCCAAGAAGCTGACTCCACACAGCTGACTGGCGAGGACGAGTTCGACCAA
GCCATTGCGAGGCGTGCCTCATAGTTCTATGCCTCCGTGTGTGACACTGC
AGAAGCTGCACCCACTGGGAGCCAGCTGGCCACGAACGCACCAAGCTCAA
AGTTCGTGAATTGCAGTGGACTGCCCGGGCCGGAACAGCAAGGTGCATCG
ACAACAGTGGAGGCTTATCCATCTCTACGAATGCTCAGCCGAACAGAACA
AGCAGCCGCTCTACGTGCCGAACTTCAG
FMO02159.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| prtp-RC | 1740 | CG1837-RC | 83..1228 | 8..1126 | 4895 | 96.6 | Plus |
| prtp-RB | 1746 | CG1837-RB | 89..1234 | 8..1126 | 4895 | 96.6 | Plus |
| prtp-RA | 1763 | CG1837-RA | 106..1251 | 8..1126 | 4895 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11718367..11718770 | 199..602 | 2020 | 100 | Plus |
| X | 23542271 | X | 11718829..11719190 | 600..958 | 1660 | 99.2 | Plus |
| X | 23542271 | X | 11717073..11717267 | 8..202 | 975 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:20:51 has no hits.
FMO02159.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:07:27 Download gff for
FMO02159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1837-RA | 98..1173 | 1..1060 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:44 Download gff for
FMO02159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prtp-RA | 98..1173 | 1..1060 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:00 Download gff for
FMO02159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prtp-RA | 98..1173 | 1..1060 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:00 Download gff for
FMO02159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11717065..11717264 | 1..199 | 98 | -> | Plus |
| X | 11718368..11718770 | 200..602 | 100 | -> | Plus |
| X | 11718832..11719223 | 603..986 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:44 Download gff for
FMO02159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11611098..11611297 | 1..199 | 98 | -> | Plus |
| arm_X | 11612401..11612803 | 200..602 | 100 | -> | Plus |
| arm_X | 11612865..11613256 | 603..986 | 97 | -> | Plus |
