FMO02161.5prime Sequence
1205 bp (1012 high quality bases) assembled on 2008-05-06
> FMO02161.5prime
CAGTCGACATGTTGCTGCTGGAGCTGAACATTCTGACCCTGAATATATGG
GGCATTCCGTATGTGTCGAGTGATCGCAGACCCCGCATCGATGCCATCTG
CAAGGAGCTGGCTAGCGGGAAGTATGACATCGTGTCCCTGCAGGAGGTGT
GGGCGCAAGAGGACAGCGAGCTACTCCAAAAGGGCACGGAGGCGGTCCTG
CCCCATAGCCACTACTTTCACAGCGGCGTGATGGGCGCCGGTCTGCTGGT
ACTGTCCAAGTACCCCATCCTGGGCACTCTGTTTCATGCGTGGTCCGTAA
ATGGCTACTTCCACCGTATTCAGCATGCCGATTGGTTCGGCGGCAAAGGT
GTGGGCCTGTGCCGCATACTCGTCGGCGGGCAGATGGTGCACCTATATAA
TGCCCACCTGCACGCGGAGTACGACAATGCCAACGACGAGTACAAGACAC
ATCGCGTTATTCAGGCCTTCGATACTGCTCAATTCATTGAAGCCACCAGG
GGGAACTCTGCGCTGCAGATTCTGGCTGGCGACCTGAATGCCCAGCCACA
GGACATCTCTTACAAGGTGCTGCTCTATACCTCCAAGATGCTCGACAGCT
GCGACTCGGACTCTTTTCGGACCAACGAATGCGAACACAACTCATACACA
TCTAAGCAAGCACGGGAGAGAAATCCTCTGGGTATCCGTATCGATCACAT
CTTTGTGCGTGGTGGCGATCATGTAAATGCTGAGATAGCCGAATACAAAC
TGCCTTTTCCGGAGCGAGTACCCGGCGAGAAATTTAGCTTCTCCGACCAC
GAGGCGGTGATGGCCAAGCTGAAGTTATTCAGCTGGAACCTAGAAGTGAG
GAGCCAGTGGCAACGATCGAGGTGAACTGCCTGGTAGAGGATGGTGAAAC
CTGTTCCGTGAGGGAGTAGAAGCAGGGGATGCTTTGACAGGAGAGGACGA
TCAGTCATCACAACACCAGCCGGAGATCCATGCAATGGAAGCTTCCACTT
CCATTCATTCCATGCCGCGCTAGAACTGCTGCCCTTTCTTGAAGCTCTTG
GCGCTGGTGGATGCTTCCTGCTGCAGTAGACTGATCGAATACTGTACTAC
AGCGCCGCACCTCTGGTTTGTCCTCTTGGTCCTTCATGGATCACGCCCCG
AGTGGACAGGCCACAATCCTTCGCGCGTCCAAGATCTACTACTGGGTTGT
GCTCG
FMO02161.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12034-RA | 1684 | CG12034-RA | 142..1283 | 2..1135 | 5245 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3219430..3220524 | 49..1135 | 4765 | 97.7 | Plus |
| 3L | 28110227 | 3L | 3219297..3219345 | 2..50 | 215 | 95.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:59:31 has no hits.
FMO02161.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:07:46 Download gff for
FMO02161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12034-RA | 173..1318 | 1..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:58:18 Download gff for
FMO02161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12034-RA | 141..1286 | 1..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:08 Download gff for
FMO02161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12034-RA | 141..1286 | 1..1139 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:08 Download gff for
FMO02161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3219296..3219344 | 1..49 | 93 | -> | Plus |
| 3L | 3219431..3220527 | 50..1139 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:58:18 Download gff for
FMO02161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3219296..3219344 | 1..49 | 93 | -> | Plus |
| arm_3L | 3219431..3220527 | 50..1139 | 98 | | Plus |
