FMO02163.5prime Sequence
1151 bp (995 high quality bases) assembled on 2008-05-06
> FMO02163.5prime
CAGTCGACATGTCAGCCGACTACTCCCATCTGAGCTCCGCCATCCTGGAG
CAGTGCTTTGGCAAGGTGGTGCAGGCGGTGGCCGACTGCCTCTTTTCGGC
CACCACGAGGACCCTGGGACAGATCACCAGTGCCACCAAGTTGTCGAGGA
AGGAAGTGGCATTTGCGCTGGCGGTGCTGGTCAAGTTCAGGCTGGTGGAC
TTTGCCGCCTCCAAGGCAAACCCCTTCCTGGCGGAGTACGCCCTCCGGCG
CGAGGATGTTCTCTGCCTCCTAAGGTATCCTCGTTACGTTCACCTGGTGC
AAACCAAGTACGGAAATGTGGGTGCTTCCATTTCGGAGGAGTTGATTAAT
TCTGGATCCGATACGGCAACTGGAATTCTGCTAAAATGCCTAGCCGAGAA
TGAAAACAAGGCAGAAAGTCCGGAGTCCTACCGCAACACCTTTCTCGAAA
TGATCACCGATCACTATATCATCAAGAGACCAGAACTGCTGGTGGGCGAC
GACCAGGATGAGAATGTGCCAAAGTTTGAGACCAACGAGTGCGATTTCTT
TAGGCATCCCAATATTGATCTTCAGTTGCTGGCCAAGATACAAAAAGGAG
AAGCCACTCTAGCGGAGGCCAGGGATTCTCACATGGTGTGGCACCTGAAC
CACGATCGCTTTCATCAAGACTTTCGAGACACCATCATGGTGGATGCTAT
TGAGCGAAAACTGGGTGAAAATGCTGCAGAGTGCTTCAAATTCATATTAA
AGATTATGTATAACACAACTGATCCGTGGGAAAGAAAACTCTCCAATCAA
ATAACTTTCGTTGAATTAAACAGGCTATTGAAAGAAAATCGAATAACCTG
GATCTCATGAAGTACTTGGACCAGTACATAAGCCTATTGACTGAGGACTC
ACTGGGATTCTTTCGAAGAGTTGGCGACATGGGTGATGGTGTGTATGTGG
TGGATATGGAACATGCCTTCGAGTCGCTGGCCTTTGCTTGTGTGGAGTGT
GTCCTCCCCGGACCGATTAGTCTCAAAGGAGCCCGGATATGTCGAGGTGA
TCGATGCAGAAATACATGAAACAGGAGACTTGCAATGGAGGCCTTGATTC
CATTCCAACAGGCCAGTGCTCTGCGTTATATTTGTCCACAGATACGCTAA
C
FMO02163.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12267-RB | 1650 | CG12267-RB | 65..1176 | 8..1115 | 5115 | 97.8 | Plus |
| CG12267-RA | 1592 | CG12267-RA | 7..1118 | 8..1115 | 5115 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12460872..12461374 | 283..785 | 2515 | 100 | Plus |
| 3R | 32079331 | 3R | 12460528..12460803 | 8..283 | 1380 | 100 | Plus |
| 3R | 32079331 | 3R | 12461601..12461788 | 891..1077 | 585 | 91 | Plus |
| 3R | 32079331 | 3R | 12461438..12461548 | 786..895 | 490 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:03:23 has no hits.
FMO02163.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:07:48 Download gff for
FMO02163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12267-RA | 60..1070 | 8..1018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:26 Download gff for
FMO02163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12267-RA | 3..1017 | 6..1018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:08 Download gff for
FMO02163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12267-RA | 3..1017 | 6..1018 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:08 Download gff for
FMO02163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12460528..12460803 | 8..283 | 100 | -> | Plus |
| 3R | 12460873..12461374 | 284..785 | 100 | -> | Plus |
| 3R | 12461438..12461543 | 786..890 | 99 | -> | Plus |
| 3R | 12461601..12461713 | 891..1003 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:26 Download gff for
FMO02163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8286250..8286525 | 8..283 | 100 | -> | Plus |
| arm_3R | 8286595..8287096 | 284..785 | 100 | -> | Plus |
| arm_3R | 8287160..8287265 | 786..890 | 99 | -> | Plus |
| arm_3R | 8287323..8287435 | 891..1003 | 99 | == | Plus |
