FMO02164.5prime Sequence
1230 bp (1012 high quality bases) assembled on 2008-05-06
> FMO02164.5prime
CAGTCGACATGCGATTCACAAGCAACATGGCTCAAATTATCGATGGCAAG
GCCATAGCCCAGGAGGTGCGCACCCAACTAGCACACGAGCTCAAGGGAAT
GGAGGCTGCTGGCTATCCGAAGCCCCATCTCACGGCCGTCATTGTGGGCG
AGGATCCGGCTAGCGAGAAGTATGTGGCTAACAAGATGGTCGCCTGCCGG
GAGGTGGGCATCTCCAGTGAGACCAAGAGATTGCCCGCCTCTACCACGCA
GGAGGAGCTGCTGCAACTGATTGCCGATCTGAACAAGGATCCCCAGGTCA
CGGGGATACTGGTGCAGCTGCCGGTACCCGAGCACATCAATGAGCGCACC
ATCTGCAATGCCGTCGATGTGGACAAGGATGTGGATGGCTTCAATGAGGT
CAACATCGGACGCACGGCTCTGGACATGGAGGCCAATATTCCGGCCACGC
CGCTGGGAGTCAAGCGACTGTTGGAGCATATGAAAATCGAAACTCTCGGT
CGTAACGCCGTTGTGGTGGGACGCTCCAAGAATGTCAGTCTACCGATGGC
AATCTTGCTGCACGCGGATGGCAAGTATGCCACCAAGGCAATGGATGCCA
CGGTGACCATCTGCCACAGGTATACACCGCCCAAGGAACTGGCTCGCCAT
TGCCGCCAAGCGGATATCATTGTGGTCGCAGTGGGAAAGCCGGGTTTGAT
CACCAAGGACATGGTTAAGCCCGGAGCCTGTGTCATCGACGTGGGCATCA
ACCGCATCAAGGATGAGAGCACTGGCCAGTTTAAGCTGGTCGGAGACGTG
GACTTTGAAGAAGTTCGCCAGGTCGCCGGCCACATCACTCCTGTGCCCGG
CGGAGTTGGTCCCATGACGGTGGCCATGCTGATGCACAACACGCTGAAGG
CAGCCAGGAAGCAGTTCGATGATCGCAATCCTCCGCAAGCTTTCCAGACC
ATTCGTTTGGCGCCGCGGGCCCAGGTAGTGGTCATAATCATATCATAATC
ATAATCATATCCCACTAGCCTAGGAAATCTTGTCATGACTAGTGCTTGAT
TCTCACAATAAAAAACGGCCCGGCGGCAACGGACGTTCTGAACATTCGAT
GGAGTTTCTGAAGTTCATTACTGATTTATCCAACGGAGTCAGCGAACTCG
AAATGCAAGTAGCCGCAGGCCTACTGCGAGATAGTGTGAATCATACCATT
CTGCTCGCACAGTGGAAGCCTCCTCGACGC
FMO02164.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmdmc-RB | 1257 | CG18466-RB | 179..1105 | 9..934 | 4610 | 99.9 | Plus |
| Nmdmc-RA | 1156 | CG18466-RA | 89..1004 | 20..934 | 4555 | 99.9 | Plus |
| Nmdmc-RC | 1233 | CG18466-RC | 167..1081 | 21..934 | 4550 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9042852..9043641 | 810..21 | 3950 | 100 | Minus |
| 3R | 32079331 | 3R | 9042667..9042793 | 928..802 | 620 | 99.2 | Minus |
| 3R | 32079331 | 3R | 10701025..10701134 | 783..892 | 220 | 80 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:35:46 has no hits.
FMO02164.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:07:50 Download gff for
FMO02164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18466-RB | 164..1107 | 1..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:26 Download gff for
FMO02164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmdmc-RB | 170..1113 | 1..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:39 Download gff for
FMO02164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmdmc-RB | 170..1113 | 1..942 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:39 Download gff for
FMO02164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9042652..9042784 | 811..942 | 96 | <- | Minus |
| 3R | 9042852..9043648 | 11..810 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:26 Download gff for
FMO02164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4868374..4868506 | 811..942 | 96 | <- | Minus |
| arm_3R | 4868574..4869370 | 11..810 | 99 | | Minus |
