FMO02166.5prime Sequence
1211 bp (1014 high quality bases) assembled on 2008-05-06
> FMO02166.5prime
CAGTCGACATGGAGAAGCTAAGCAAGGCGAAAAAAGTGGCGCGCGAGGAG
AAGCAGCGCGACCAGAAGTTGGAGGAGTTGGTCATGAAATCCCTTGACGA
ATGCCCCTCCGCCGAGGAGAAGGTGAAACTTCTGCTGCAACGCCATGTGG
ACAGCGAAAAGAATGTAAGCCGGCTGACGGCGGAACTGCGTGTCCTGCAG
CGCCAAATGGAGTCGCAGCAGAGGGAGAAGGAGCAGGTTCAGCGGGATCT
TAACAAGAGCGTCCTGATGCGAGACAAGCTGCAGGAGGTGTGCCGCGAAC
AGCAGCGCATCATAAAGTCCGTAAAGAACGAGAGCCTGCTGCAAATCAAA
GTGGAGGAGGAGCGGCGCAAGGAGAGCCAGACAAAGTTCCAAAGCTCCCT
GAACGATGTCCAAAAGTCGCTGGCCAAGAACAACGAGGAGAACATCAAGC
TGCGCGATTACAACATCGAGATGACCAAGAAGTTAAAGCTGCTGGCCGAG
CAGTACCAAACGAGGGAGCAGCACCTGGAGAAGCTCAATGAACAGGTTCA
GTTGGAGGCCCAGCTGCACCAGGCCAAGCTGCAAAAATGCCAGGTGGAGG
CTGCCATGGAAAAGGAGATATTGAGCAAGGAAAACCAGATTGGCCTGGAG
AAACTGATGCAAGCGCAACGTGCCATAAAGGATCTCACCGATCGGGAGCA
CCAACTGAAGGAGCAACTGAACATATACACCGCCAAGTACGATGACTTCC
AGCAGTCGCTGCAGAAGTCCAATGAGGTTTTCGGCAGCTACAAGGTGGAG
CTTGAGAAGATGTCCAAGCACACTAAGAAGATCGAGAAAGGAGGCGCTGG
GCTGGCGGCAAAAGTACGAGAAGCTACTGCCATGGTGATCGATTTAGCCA
CAGAAAAGAGTCTGCAGACGCCAGCACTCAGAGCGCCTGCAGAAGCAAAT
ACAGCAGCTGCAGAAGGCTACTGGCGTGCCTCTACAGCTGGAGAGGACAA
CACTGCACAAGTGCCTGCGGAATCACGAGATCGAATACCCGCCCTGGCGC
AGTGCCTCTGACAGAGCCAGTAACGGTCAGGCCAGTATGCTGAAATGTAA
ATGGAAATGGATGTCTCGCAATTGTGGCGACTGAGCTACCATGGGCAATC
GCGAACATGACTGCTACACGCAATGAATCGAACTTCATTGAGGAGGAAGG
GCCCAGAGAAA
FMO02166.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5886-RA | 1894 | CG5886-RA | 101..1224 | 8..1126 | 5155 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25851919..25852322 | 80..483 | 2020 | 100 | Plus |
| 3R | 32079331 | 3R | 25852817..25853238 | 629..1053 | 1740 | 97.7 | Plus |
| 3R | 32079331 | 3R | 25852428..25852575 | 482..629 | 740 | 100 | Plus |
| Y | 3667352 | Y | 1457593..1457737 | 186..333 | 435 | 87.8 | Plus |
| Y | 3667352 | Y | 1883828..1883972 | 333..186 | 435 | 87.8 | Minus |
| Y | 3667352 | Y | 1888797..1888941 | 333..186 | 435 | 87.8 | Minus |
| 3R | 32079331 | 3R | 25851732..25851806 | 8..82 | 375 | 100 | Plus |
| 3L | 28110227 | 3L | 23315659..23315764 | 321..216 | 290 | 84.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:23:01 has no hits.
FMO02166.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:07:53 Download gff for
FMO02166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5886-RA | 71..1211 | 1..1134 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:44 Download gff for
FMO02166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5886-RA | 93..1233 | 1..1134 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:16 Download gff for
FMO02166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5886-RA | 93..1233 | 1..1134 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:16 Download gff for
FMO02166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25851724..25851804 | 1..80 | 95 | -> | Plus |
| 3R | 25851920..25852320 | 81..481 | 100 | -> | Plus |
| 3R | 25852428..25852574 | 482..628 | 100 | -> | Plus |
| 3R | 25852817..25853319 | 629..1126 | 95 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:44 Download gff for
FMO02166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21677446..21677526 | 1..80 | 95 | -> | Plus |
| arm_3R | 21677642..21678042 | 81..481 | 100 | -> | Plus |
| arm_3R | 21678150..21678296 | 482..628 | 100 | -> | Plus |
| arm_3R | 21678539..21679041 | 629..1126 | 95 | == | Plus |
