FMO02168.5prime Sequence
899 bp (899 high quality bases) assembled on 2008-05-06
> FMO02168.5prime
CAGTCGACATGTTTTTGCATAACACAAAGTTTTGCAGACTGGCAAGTGGT
CTGGCAGGAGGAGTGCGCAACCTGAGCGGCCAAAAACCGAAGACCGCGAT
CCTAATGCTGAACATGGGCGGTCCGACCCACACGGACCAGGTGCATGACT
ACCTCCTGCGTATTATGACCGACCGGGACATGATCCAGCTGCCGGTGCAG
AGCCGTCTTGGTCCGTGGATCGCCCAGCGCAGGACGCCCGAGGTACAGAA
GAAGTACAAGGAGATCGGCGGTGGTTCACCGATTCTTAAGTGGACCGAGC
TGCAGGGCCAGCTCATGTGCGAGCAGTTGGACAGAATCTCCCCGGAGACA
GCACCTCACAAGCACTACGTCGGTTTCCGCTACGTGAATCCCCTCACTGA
GAACACGCTGGCCGAGATCGAAAAGGACAAACCAGAGCGCGTTGTACTCT
TTTCACAATATCCACAGTACAGCTGCGCCACCTCCGGATCCAGCTTTAAC
TCCATATTTACTCATTATCGGAGCAATAATCTGCCCTCGGATATCAAATG
GAGCATTATCGACAGGTGGGGCACTCATCCACTTCTAATCAAAACGTTTG
CCCAGCGAATTCGCGACGAGCTGGCCAAATTTGTGGAAACGAAACGAAAT
GATGTGGTCATCCTCTTCACTGCCCACTCCCTTCCCCTTAAGGCTGTGAA
CCGGGGTGACGCGTATCCCTCGGAGATTGGTGCTAGCGTACACATGGTGA
TGCACGAACTTGGTCAGACGAATCCCTACAGCCTGGCATGACAATCCAAG
GTGGGCCCGCTACCCTGGCTGGCGCCCGCAACTGATGATGCCATTAAGGT
GCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGCCCAGGTAAGTGGTCA
FMO02168.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FeCH-RC | 1466 | CG2098-RC | 87..929 | 9..851 | 4185 | 99.8 | Plus |
| FeCH-RA | 1407 | CG2098-RA | 87..927 | 9..849 | 4175 | 99.8 | Plus |
| FeCH-RB | 1338 | CG2098-RB | 1..480 | 47..526 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31811740..31812119 | 425..46 | 1900 | 100 | Minus |
| 3R | 32079331 | 3R | 31810997..31811321 | 851..527 | 1595 | 99.4 | Minus |
| 3R | 32079331 | 3R | 31811377..31811478 | 526..425 | 510 | 100 | Minus |
| 3R | 32079331 | 3R | 31812171..31812210 | 48..9 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:36:05 has no hits.
FMO02168.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:07:55 Download gff for
FMO02168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2098-RC | 47..903 | 2..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:32 Download gff for
FMO02168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FeCH-RC | 80..936 | 2..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:50 Download gff for
FMO02168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FeCH-RC | 80..936 | 2..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:50 Download gff for
FMO02168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31810990..31811321 | 527..859 | 98 | <- | Minus |
| 3R | 31811377..31811478 | 425..526 | 100 | <- | Minus |
| 3R | 31811741..31812119 | 46..424 | 100 | <- | Minus |
| 3R | 31812174..31812217 | 2..45 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:32 Download gff for
FMO02168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27636712..27637043 | 527..859 | 98 | <- | Minus |
| arm_3R | 27637099..27637200 | 425..526 | 100 | <- | Minus |
| arm_3R | 27637463..27637841 | 46..424 | 100 | <- | Minus |
| arm_3R | 27637896..27637939 | 2..45 | 91 | | Minus |
